Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13j22
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 103 1e-22
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 43 2e-04
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 39 0.003
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 38 0.005
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 37 0.011
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 35 0.033
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 32 0.31
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 30 0.95
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 30 1.3
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 29 2.2
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 29 2.9
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 28 5.1
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 27 6.7
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 103 bits (246), Expect = 1e-22
Identities = 46/65 (70%), Positives = 57/65 (87%)
Frame = +3
Query: 222 VDKCIGSRIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLXGN 401
+D+CIGS+I +IMK DKE+ GTL GFD +VNM+L+DVTEYE T EGR+ITKLDQILL GN
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGN 143
Query: 402 NIAML 416
NIA++
Sbjct: 144 NIAIV 148
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +3
Query: 243 RIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLXGNNIAMLV 419
+I + + D + G + GFD+++N++LDD E + RK L +ILL G+NI +++
Sbjct: 19 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRK--SLGRILLKGDNITLMM 75
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +3
Query: 228 KCIGSRIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLXGNNI 407
K + ++ I + ++ + GTL GFD F+N+++D+ E G T + +++ GN++
Sbjct: 12 KYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVVRGNSV 67
Query: 408 AML 416
M+
Sbjct: 68 VMI 70
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 234 IGSRIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTEYESTPE 356
+ RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 67
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 294 GFDDFVNMLLDDVTEYESTPEGRKITKLDQILLXGNNIAMLVPGGE 431
GFD+++N++LD+ E + RK L +ILL G+NI +++ G+
Sbjct: 98 GFDEYMNLVLDEAEEINIKKDTRK--SLGRILLKGDNITLMMNTGK 141
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 35.1 bits (77), Expect = 0.033
Identities = 15/59 (25%), Positives = 34/59 (57%)
Frame = +3
Query: 240 SRIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLXGNNIAML 416
S + + + ++ + GTL GFD F+N+++D+ E G + + +++ GN++ M+
Sbjct: 30 SILPVKLNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNEKNDIGMVVIRGNSVVMI 84
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 231 CIGS-RIHIIMKNDKEMXGTLXGFDDFVNMLLDDV----TEYESTPEGRK 365
C+G ++ I +N+K++ G + FD NM+L++V TE T +G+K
Sbjct: 378 CLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKK 427
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 30.3 bits (65), Expect = 0.95
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 270 KEMXGTLXGFDDFVNMLLDDVTEYE 344
+ + GTL G+D +N++LD+ E+E
Sbjct: 34 QSVTGTLKGYDQLLNLVLDEAVEFE 58
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 222 VDKCIGSRIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTE 338
++ + I +I + + + GTL GFD N++LD+ E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +3
Query: 240 SRIHIIMKNDKEMXGTLXGFDDFVNMLLDDV----TEYESTPEGRK 365
+++ I +N+K++ G + FD NM+L++V TE T +G+K
Sbjct: 32 TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 77
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 234 IGSRIHIIMKNDKEMXGTLXGFDDFVNMLLDD 329
+G + + +KND + GTL D ++N+ L++
Sbjct: 11 VGKEVTVELKNDLAIRGTLHSVDQYLNIKLEN 42
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 272 RNGWNSTRIR*FCKHVTRRCYRIRID 349
R GW + RIR C H + + IR+D
Sbjct: 230 RLGWATDRIRILCLHTNQSMHSIRLD 255
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 222 VDKCIGSRIHIIMKNDKEMXGTLXGFDDFVNMLLDDVTEYESTPEGRKI 368
++KCI + + ND E +D N LLDD+ + T G+ I
Sbjct: 742 LEKCITELVKHVFNNDTEALNARILINDGGNTLLDDLFLFFITSPGKII 790
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,262,283
Number of Sequences: 37544
Number of extensions: 190569
Number of successful extensions: 427
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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