Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13j21
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 45 1e-05
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 31 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.5
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 4.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 7.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 7.8
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +3
Query: 165 TRDTVQHYVDSFRVRTVGGNGGDGCISFLSVWCKDHAXXXXXXXXXXXHV-IFKATNSVR 341
T T + D R+R GG+GG GC SF+ + + V + S
Sbjct: 24 TEATQPKFQDKIRIRIQGGDGGQGCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFN 83
Query: 342 SLNHCKAVIQAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIK 464
+L+H + +A G G + G VI+ VP GT+I+
Sbjct: 84 NLSHLSQIHKASNGTNGKGGNRHGSCGKSVILYVPPGTVIR 124
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 549 NKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFP 674
N FL++ ++P A G GE + LE++++ +GL+G P
Sbjct: 204 NVHFLSENNRSPKFATKGLTGEQKLIELELKTICEIGLVGLP 245
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 93 PNTVSKRPYCDNVPKPLRSLKPKSTRDTVQHYVDSFRVRTVGGNGGDGCISFLSVW 260
P+ ++ P+ DN P S K S RDT HY ++ + + + G S S W
Sbjct: 284 PSLANENPHSDN-PNLKYSSKTLSKRDTSSHYPETLKASSKHSSPVKGNSSISSTW 338
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 540 LPPHPAPQQTSTPPCPNPQSL 478
LPP +TSTPP P P SL
Sbjct: 403 LPPLGNASRTSTPPVPTPPSL 423
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 458 NKKPKWSSDWGFGQGGVDVCCGAGWG 535
+KKP+ +WG+ +D C G+G
Sbjct: 199 HKKPELKPEWGWDAWNIDTWCPLGYG 224
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 566 GHRTGSGHSRVRGCRRNKHLPSG 634
GH + +G SR+ G N HLPSG
Sbjct: 85 GHSSYAG-SRISGGNSNSHLPSG 106
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 227 SISSDSPNAKGIYIMLNCISSRLGFQTTERLRHVITVRSFRHCV 96
S D+ N GI ++ + SS++GF + +IT +SF C+
Sbjct: 379 SSGGDNKNDTGIPLIQSS-SSKVGFGPYALSKDLITAKSFHKCI 421
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 265 LHHTLRKDMQPSPPFPPTV 209
L+H+L+ M PS P PP V
Sbjct: 166 LNHSLQNSMPPSTPTPPPV 184
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 540 LPPHPAPQQTSTPPCPNPQSL 478
+ P PAP Q + PP P PQ+L
Sbjct: 240 IAPVPAPNQAALPPIP-PQAL 259
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 493 KSPIT*PFWFFIIVPIGTLTMTCPAFLPLQS 401
++ IT F+ I+ P+GTL TC FL + S
Sbjct: 1432 RARITTMFYGEILGPLGTLFFTCIPFLFINS 1462
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 445 GTLTMTCPAFLPLQSLLNPF 386
G+LT+ CP + L+ +L PF
Sbjct: 187 GSLTIDCPTPIDLRGMLGPF 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,870
Number of Sequences: 5004
Number of extensions: 57463
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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