Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13j09
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.069
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    24   7.9  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 31.1 bits (67), Expect = 0.069
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 81  STTVKRTDSSHRLKSQVV-DKRPR--RSLDSPRLDGYVLASSPIPHTDWNEELKLYAQSH 251
           STT  +TDSS+     +V   +P    SLD  +L   + A  PI   ++  + KLYA  H
Sbjct: 309 STTTSQTDSSYNDVHDIVGSSQPDYLESLDYSQLFSILYALYPINFLEFLRDPKLYASKH 368

Query: 252 GY 257
            +
Sbjct: 369 NF 370


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 369 TCFIVFLIHSSRLDDYL-NFLKSHVRQFRHLLN 274
           TCF +FL H+S L  +L   L +    ++ L+N
Sbjct: 638 TCFHIFLNHNSELISFLEGILPNASPNYKTLIN 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,910
Number of Sequences: 5004
Number of extensions: 22720
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)