Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13j09
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       29   1.9  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    28   2.5  
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735...    27   4.3  
05_04_0064 - 17613070-17614749                                         27   7.6  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 126 QVVDKRPRRSLDSPRLDGYVLASSPIPHTDWN-EELKLY 239
           +++ + P +S+DS  LDGY   +  +    W+ EE K Y
Sbjct: 432 EIIFENPEKSMDSVHLDGYAFFAVGMGPGKWSAEERKTY 470


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 81  STTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLA-----SSPIPHT 212
           S+T+ RT SS    +    KRPRR   +P  D  VLA       P PHT
Sbjct: 38  SSTLGRTRSSSSASATPNSKRPRRPPCTPESDPPVLALRAHTPDPDPHT 86


>09_06_0070 -
           20670387-20670473,20672418-20672645,20673388-20673508,
           20673604-20673702,20673802-20673833
          Length = 188

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 77  AQHNSQTDRQLASIKKPGSRQTAAPFFRFSSFGRICFGIVA 199
           A+H +  DR L  ++      TA+      S GR CF  VA
Sbjct: 99  ARHEADIDRGLLQLRASAKDATASHLQAAVSLGRACFAEVA 139


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 250 WLWAYSFNSSFQSVCGMGDDAKTYPSKRGESKERRGRLSTT 128
           W W+YS+    +S+  +G  + +  S+   S      +S+T
Sbjct: 19  WRWSYSYLEKIRSMSVVGSSSSSSSSRSARSSNYSSTVSST 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,847,714
Number of Sequences: 37544
Number of extensions: 151036
Number of successful extensions: 446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)