Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13j07
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77135-3|CAB00878.1|  322|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL034365-1|CAA22256.1|  322|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z77135-3|CAB00878.1|  322|Caenorhabditis elegans Hypothetical
           protein T16A9.5 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 640 GLLQGHTVNKVYLNLQPL*F 581
           GLL GH+++  YL+ QPL F
Sbjct: 195 GLLMGHSISYTYLSAQPLGF 214


>AL034365-1|CAA22256.1|  322|Caenorhabditis elegans Hypothetical
           protein Y69E1A.1 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 640 GLLQGHTVNKVYLNLQPL*F 581
           GLL GH+++  YL+ QPL F
Sbjct: 195 GLLMGHSISYTYLSAQPLGF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,785,649
Number of Sequences: 27780
Number of extensions: 303290
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)