Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13j07
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 108 VVTELHTNPKS*LNIKTTFQSLICRTLH*FITYWFE-NKTNISN 236
           ++ EL  NP+   NIK T  SLI      F    FE + T +SN
Sbjct: 273 MLMELQKNPQKLENIKLT-DSLIAAQAFVFFLAGFETSSTTMSN 315


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 463 NWKVGNSNY 489
           NW+V NSNY
Sbjct: 15  NWRVNNSNY 23


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 629 RPYSKQGIPKFATFIILI 576
           RP SKQG+P    F I +
Sbjct: 2   RPPSKQGLPVLVDFNIFV 19


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 535 SRKKAEDLNMSDKFMRII 588
           S  K +D+N+ DK+ RII
Sbjct: 454 SMPKIKDVNIIDKYSRII 471


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 499 RTGCFPYIKYHCSRKKAEDLNMSDKFMRIIK 591
           +TG  PY+++ C   +     ++D + +I K
Sbjct: 266 QTGLSPYLRFGCLSTRLFYYQLTDLYKKIKK 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,770
Number of Sequences: 438
Number of extensions: 3848
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)