Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13i21
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    29   0.44 
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   4.1  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   5.4  

>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 417 RRGRLALAARTHTTNKLCLTHYPGAGCFI 331
           RR  L LAA  H    +C  H P AG F+
Sbjct: 359 RRNALLLAADKHLPKSVCKYHSPKAGLFL 387


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 417 RRGRLALAARTHTTNKLCLTHYPGAGCFI 331
           RR      A  +  N +C+ H P AG F+
Sbjct: 362 RRNAFLNVANKYLPNSVCIYHVPRAGLFL 390


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 271 QTLLPRC--WVYGFGNLKVAVFNE 336
           QT+LP    W Y F NLK+ V +E
Sbjct: 422 QTILPNANRWYYFFKNLKLFVLDE 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,944
Number of Sequences: 5004
Number of extensions: 20189
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)