Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13i20
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   0.49 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   0.49 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   8.0  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   8.0  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 0.49
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  TDIMCREGKHTALQEVLPGED 5
           T++   E  H ALQE +PG++
Sbjct: 230 TEVKSVEMHHEALQEAVPGDN 250


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.49
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  TDIMCREGKHTALQEVLPGED 5
           T++   E  H ALQE +PG++
Sbjct: 287 TEVKSVEMHHEALQEAVPGDN 307


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 54  HIISVLLLCKTVILMCL 104
           H+I+VLL    VIL+ +
Sbjct: 10  HLITVLLFSFVVILLII 26


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 54  HIISVLLLCKTVILMCL 104
           H+I+VLL    VIL+ +
Sbjct: 10  HLITVLLFSFVVILLII 26


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 233 LPVKQSFCIKQRC 195
           LP++ SFC+   C
Sbjct: 147 LPLRLSFCVVLAC 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,583
Number of Sequences: 438
Number of extensions: 1365
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)