Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13i02
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 32 0.095
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 31 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.2
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 27 2.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.0
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 3.6
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 27 3.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.7
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 6.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.2
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 25 8.2
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.9 bits (69), Expect = 0.095
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 148 PASAGPEPRRSPAPDRRPLSADEPRTLAARKAYPEEPRSPKPDVSDEA 291
P + P SP P +P SA P T P P P P V D+A
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQA 203
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.17
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 464 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 625
VP PSP P+ + R + QQDW P +W+ +P+ TIP +R
Sbjct: 222 VPRGPPSPPPPVLHSPPRKVSAQEQQDWQIPPS---ISNWK-NPKGYTIPLDKR 271
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 145 RPASAGPEPRRSPAPDRRPLSADEPRTLAARKAYPEEPRSPKPDV-SDEAP 294
RP SA P +P P P+S P + A P P +P P + + AP
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP--PSAPPPPLPASSAP 1741
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +1
Query: 148 PASAGPEPRRSPAPDRRPLSADEPRTLAARKAYPEEPRSPKPDVSDEA 291
P++ +P P + PL + P P SPKP + D +
Sbjct: 1326 PSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIPDSS 1373
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +3
Query: 528 WRTNRTGPRSQSAAARSPGALTLGQAPSPVY--GAQH-----RENNVLHIIDIYLETWFN 686
WR+ T P ++ RS G+L + P ++ G H R N + +ID TW N
Sbjct: 441 WRSRLTNPVNKWYFERSVGSLKSSKTPWKLFWTGDSHVRNLDRVNQYMSVIDKIQPTWLN 500
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/68 (26%), Positives = 23/68 (33%)
Frame = +1
Query: 145 RPASAGPEPRRSPAPDRRPLSADEPRTLAARKAYPEEPRSPKPDVSDEAPLDLTVRKEIS 324
RPA+ GP P A + A Y + P S P + PL +
Sbjct: 1573 RPATVGPGPFGKVASQKNLTVQTNTNNAAMESFYSDRPTSSGPSYQNRTPLTGQESMNMG 1632
Query: 325 VCDFARRS 348
V RRS
Sbjct: 1633 VYSPYRRS 1640
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Frame = +1
Query: 175 RSPAPDRRP-LSAD-EPRTL--AARKAYPEEPR--SPKPDVSDEAPLDLTVRKE 318
RS +P P ++ D +P+TL +A + P++ R +PKP V DE P+ + +E
Sbjct: 887 RSSSPTVTPTVNTDRQPKTLTNSADELSPQKRRVENPKPVVKDEGPVSIVEDEE 940
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 340 SRNHKPISLFERSSPGAPHRSHL 272
SR+H+ +S + SSP P R HL
Sbjct: 45 SRSHRSLSSVDVSSPSLPLREHL 67
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.7
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Frame = +1
Query: 109 FGV*VNMMAVETRPASAGPEPRRSPAPDRRPLSADEPRTLAARKAYPEEPRSPKPDVSDE 288
FG A+ ++P +G +S S ++ + + EEP + KP+ S
Sbjct: 167 FGSITRNAAIPSKPKVSGNMQNKSGVSSYSSKSQSVNSSVTSNPPHTEEPVAAKPEASST 226
Query: 289 A---PLDLTVRKEISVCDFARRSFADPSDYVRTQLILRQSQEFLATARDSGTDSDDSAGR 459
A P T + PS + T Q+ + A+ + + S +
Sbjct: 227 ATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTPSNT 286
Query: 460 LSPADEALTGKAYKKSLMKRYMNGEPT 540
S ++ G +K RY N P+
Sbjct: 287 SSRSNRQNHGNFSEKRHYDRYGNSHPS 313
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 189 RCRRAARFRSSTGRARLHCHHVYSNTEHHNHKSTVSYVRQRASERACN 46
R F GRA + + N++ ++ VSYV ++A E+ N
Sbjct: 715 RLSEGINFSDKLGRAVMVVGMPFPNSQDVEWQAKVSYVEEKAKEKGIN 762
>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 358 GRRTSVSRNHKPISLFERSSPGAPHRSHL-VSGIWVLQGR 242
GR S+ NHKP+ ++ GA L SG +L GR
Sbjct: 993 GRVASLEMNHKPVDKVKKGQAGAGVAMKLESSGSQILFGR 1032
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 129 HVYSNTEHHNHKSTVSYVRQRASERACN 46
HVYS NHK+ V + Q +++ N
Sbjct: 86 HVYSQNVELNHKTQVDFTEQLIPKKSLN 113
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 145 RPASAGPEP-RRSPAPDRRPLSADEPRTLAARKAYPEEPRSPKP 273
R SA P P R +PA +A PRT+A A ++P P
Sbjct: 3 RRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPP 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,083
Number of Sequences: 5004
Number of extensions: 54797
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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