Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h19
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   5.0  
07_03_0698 - 20765305-20768526                                         28   5.0  
08_01_0893 - 8789491-8791416                                           27   8.7  

>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 170 NFSEEVGTMREQEGDGPESR*PDSMDE 250
           +FSE+VG + E E + P  R PD +DE
Sbjct: 331 SFSEDVG-INEDEEENPPDRIPDMVDE 356


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 105 PHEFGTVTKNAVVEIRSRNQRRTSARKWGR*GNRKATARRAVSRTRW 245
           P E  T  +     +R RNQRRT+A  W         +RRA+    W
Sbjct: 134 PVEVTTTMEPRDASVRPRNQRRTNAGSWNN------PSRRAILEDGW 174


>08_01_0893 - 8789491-8791416
          Length = 641

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 60  SASATLQRNDRSVRWHIP 7
           S  A L R +R +RWHIP
Sbjct: 552 SPKAVLNRAERELRWHIP 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,134,486
Number of Sequences: 37544
Number of extensions: 151869
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)