Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h19
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 145 RSEVEINEELQR 180
           RS ++INEE+QR
Sbjct: 482 RSGIDINEEIQR 493



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 193 DEGTGRRRPGEPLAGLD 243
           DEGT RRR     +G+D
Sbjct: 470 DEGTVRRRVAVDRSGID 486


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 450 LRGWCAPACAAAGD 409
           LR +  P C A GD
Sbjct: 70  LRAYTCPICGACGD 83


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 363 SASATPTWRLLGELTCHPQRH 425
           + ++T T  L G L+ HPQ+H
Sbjct: 182 TTTSTGTRLLHGILSQHPQQH 202


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 395 RRTHVSPAAAHAGAHQPLKPVTT 463
           R    S ++ H+  H+P  P TT
Sbjct: 635 RERDASLSSTHSHPHEPGAPATT 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,797
Number of Sequences: 438
Number of extensions: 1434
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)