Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h14
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1024 - 25449163-25449824,25451882-25452191                       29   2.8  
06_01_0087 + 695443-695655,696669-696983                               29   2.8  
09_06_0142 - 21107878-21109104                                         29   3.7  
12_02_1252 - 27346314-27347327                                         29   4.9  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   4.9  
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    28   6.5  
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574           28   8.6  

>12_02_1024 - 25449163-25449824,25451882-25452191
          Length = 323

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 359 GTYDDNTDYNIA---VIYSEYDITTQTVF--VSGDDSLVSPPPPAHP 484
           GT+D   D  +A   V    Y +  +T F   +G+D L  PPPPA P
Sbjct: 186 GTFDTALDAALAYDAVSRRLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232


>06_01_0087 + 695443-695655,696669-696983
          Length = 175

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 446 DDSLVSPPPPAH---PDWDAVSPL 508
           DD L  PPPPA     DW+A +PL
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPL 49


>09_06_0142 - 21107878-21109104
          Length = 408

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 296 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 394
           I   +   FG L C+ + GEPG Y   T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291


>12_02_1252 - 27346314-27347327
          Length = 337

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 284 GL*DEMEWKAAPFSSVPRQRPHHAEIGQTQSSHCRHEFVMVSDGTK 147
           GL DEM W   P+S+       HA +     +H  + +    DG K
Sbjct: 261 GLADEMTWPQPPYSAFREDSFGHAVLDIKNRTHAYYAWYRNDDGAK 306


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 298 DVAMEVYKMRWNGK 257
           D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702


>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 116 LHTQTSWEDDLYCRKLADIS*SGQKLRQWH 27
           L+ +TSWE + +C+ L   + + ++ + WH
Sbjct: 164 LYAETSWEKESWCKALRLAATADKEKKNWH 193


>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
          Length = 212

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/88 (28%), Positives = 34/88 (38%)
 Frame = +2

Query: 218 GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAV 397
           G+  +  R    RLS P      H Y+ T       P + +     P TY     +    
Sbjct: 91  GDPCIPLRPVQPRLS-PPQPPPYHHYLYTTTA----PPSALHPMSYPATYPAPPRHQQPA 145

Query: 398 IYSEYDITTQTVFVSGDDSLVSPPPPAH 481
              +Y I      VS  D+LV+PPPP H
Sbjct: 146 AVGDYVIGHA---VSAGDALVAPPPPPH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,140,682
Number of Sequences: 37544
Number of extensions: 449378
Number of successful extensions: 1442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)