Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h14
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    29   4.4  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    29   4.4  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical
           protein D2030.8 protein.
          Length = 511

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +2

Query: 32  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 211
           ++L FG  K Y+R    +D   +   + G  PY+LSRF+   L+ + + + N    +   
Sbjct: 387 VLLFFG--KFYER--SQQDASVHERAFAGSLPYELSRFSHKDLENISVMIKNACENWKGR 442

Query: 212 QHGEAVVLERKKM-ERLSIPSHLIDLH 289
             G  V   +K++ E +  P+ L + H
Sbjct: 443 TVGLRVATSQKRIHEGVKKPALLPNPH 469


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 200 TQSSHCRHEFVMVSDGTKQTERDRMEFGLH-TQTSWEDDLYC 78
           TQS  CR  F  +S+G+     D    GL  +Q S ED+ +C
Sbjct: 38  TQSCECRDGFARISNGSCAMVSDLARGGLGLSQDSEEDEPFC 79


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 200 TQSSHCRHEFVMVSDGTKQTERDRMEFGLH-TQTSWEDDLYC 78
           TQS  CR  F  +S+G+     D    GL  +Q S ED+ +C
Sbjct: 38  TQSCECRDGFARISNGSCAMVSDLARGGLGLSQDSEEDEPFC 79


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 262 HSISSYRPPLLHQNQ---HYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHHAN 429
           H    Y PP +H +    H+  + T   H  +    H    HG  Y  H +   HHH +
Sbjct: 25  HGAPGYMPPTVHVHTDGGHHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYES-HHHHGH 82


>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 286 EVYKMRWNGKP--LHFLPFQDNG 224
           EV+   WNG+P  +  LPF++NG
Sbjct: 118 EVFSTVWNGRPVAIKVLPFENNG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,837
Number of Sequences: 27780
Number of extensions: 363740
Number of successful extensions: 1046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)