Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h08
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    75   1e-14
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.46 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   3.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   3.3  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   7.5  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   9.9  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 34/60 (56%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
 Frame = +3

Query: 495 LDFRIGKIVEISKHPDADSLYVEKIDCGE-ENPRTVVSGLVNHVPIDEMRERIVMVLCNL 671
           +DFRIG I +  KHP+ADSLYV  I CG+ E PRTV SGLV ++P+++M++R V+V+ NL
Sbjct: 282 IDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVANL 341


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 528 SKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 650
           SK P      ++ IDC EE  + ++  +V  VP+DE+ E +
Sbjct: 807 SKTPQVVGALLD-IDCDEELVQNLLMSVVGQVPVDELVEEV 846


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 525 ISKHPDADSLYVEKID 572
           I K PD +SLY+EK D
Sbjct: 193 IQKEPDLESLYIEKTD 208


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 546  DSLYVEKIDCGEENPRTVVSGLVNHVPI-DEMRERIVMVLCNL 671
            DS ++EK+ C         S L NH+ + D  R+  +  LC+L
Sbjct: 1001 DSWFLEKLPCPLTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHL 1043


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 474 IAVDVRKL-DFRIGKIVEISKHPDADSLYVEKIDC-GEENPRTVVSGLVNHVPI 629
           +A+DV  + D + G  V +  +P+   L +E++     ENP  +++GL   VP+
Sbjct: 316 LAIDVTDVPDVKRGDDVVLWGNPE---LTIEEVSTFSNENPFEIITGLTRRVPL 366


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 391 KNQLSIKRRRKSKILT--KNPKINLVNR 468
           KN+   KRR+ SK+LT   N +I  VNR
Sbjct: 77  KNEHFSKRRKLSKVLTPPTNDEIKFVNR 104


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 42  LYILTFCLSFMLKLSFVLRRNMSQSVTKLIN 134
           LY L+ CL F + LSF +      S+ + ++
Sbjct: 92  LYFLSCCLRFTVSLSFTMNTAQGHSLIQTLS 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,219
Number of Sequences: 5004
Number of extensions: 37555
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)