Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h08
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285...    94   8e-20
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522     82   3e-16
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    51   7e-07
02_01_0462 + 3332464-3332470,3333606-3335806                           28   5.9  

>06_03_0207 -
           17927753-17927983,17928077-17928178,17928273-17928502,
           17929257-17929343,17931263-17931389,17931485-17931628,
           17931920-17931985,17932136-17932254,17932437-17932551,
           17932626-17932732,17932969-17932983,17933810-17933900,
           17934528-17934671,17934750-17934980,17935093-17935248,
           17935330-17935483,17935973-17936117,17936241-17936355
          Length = 792

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = +3

Query: 468 ADIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRER 647
           A++ V V KLD R+G I +  KHPDADSLYVE+ID GEE PRTVVSGLV  +P++EM+ R
Sbjct: 625 AEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNR 684

Query: 648 IVMVLCNL 671
            V VLCNL
Sbjct: 685 KVCVLCNL 692


>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
          Length = 252

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 33/59 (55%), Positives = 50/59 (84%)
 Frame = +3

Query: 495 LDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERIVMVLCNL 671
           LD R+G++V+  +HP+AD+LYVE++D GEE PRT+ SGLVN++PID++++  V+VL NL
Sbjct: 88  LDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANL 146


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +3

Query: 471 DIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 650
           D   +V  L+ ++G I +  KHP ADSL VE+ID G+ N   VVSGL      +E+  R 
Sbjct: 244 DSECNVSILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRH 303

Query: 651 VMVLCNL 671
           V+++ N+
Sbjct: 304 VVLITNV 310


>02_01_0462 + 3332464-3332470,3333606-3335806
          Length = 735

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 237 NTTLSAKVNAAKAELIGLEISHGKRQYAIPGKTDLLETTKIV 362
           N TL A  +AA   L  +++SH     AIP    +L T  ++
Sbjct: 66  NGTLDALYSAAFENLTTIDLSHNNLDGAIPANISMLHTLTVL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,348
Number of Sequences: 37544
Number of extensions: 201960
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)