Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13h08
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...   101   5e-22
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    31   0.75 
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z79694-3|CAB01962.3|  594|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AY387697-1|AAR26326.1|  594|Caenorhabditis elegans SOL-1 protein.      27   9.2  

>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score =  101 bits (242), Expect = 5e-22
 Identities = 43/67 (64%), Positives = 56/67 (83%)
 Frame = +3

Query: 471 DIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 650
           D  +DV +LD R+G+I++  KHPDAD+LYVE+ID GE  PRTVVSGLV HVP+D+M+ R+
Sbjct: 752 DDTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRL 811

Query: 651 VMVLCNL 671
           V+VLCNL
Sbjct: 812 VVVLCNL 818


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 413 LFIDNWFFITNGILNSCNNLGCFQQVCFTRY 321
           LFI       + ++  CN +GCF Q C+  Y
Sbjct: 58  LFIQYGLLKDDDVITYCNGIGCFLQACYLMY 88


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 307 FPCDISKPINSAFAAFTFAD 248
           +PCD +KPI S F+ + F D
Sbjct: 471 YPCDANKPIPSQFSTYAFCD 490


>Z79694-3|CAB01962.3|  594|Caenorhabditis elegans Hypothetical
           protein C15A11.3 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 477 AVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENP-RTVVSGLVNHVPIDEMRERIV 653
           AV++ +  +R+ K   I   PD    Y  K++C    P R     +VN + +D  R+ I+
Sbjct: 156 AVEMAECSYRVEKQKAIIYSPDYPYYYPSKVNCTYHIPQRKGFQIVVNSIVMDIGRDAIL 215

Query: 654 MV 659
            +
Sbjct: 216 QI 217


>AY387697-1|AAR26326.1|  594|Caenorhabditis elegans SOL-1 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 477 AVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENP-RTVVSGLVNHVPIDEMRERIV 653
           AV++ +  +R+ K   I   PD    Y  K++C    P R     +VN + +D  R+ I+
Sbjct: 156 AVEMAECSYRVEKQKAIIYSPDYPYYYPSKVNCTYHIPQRKGFQIVVNSIVMDIGRDAIL 215

Query: 654 MV 659
            +
Sbjct: 216 QI 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,040
Number of Sequences: 27780
Number of extensions: 208389
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)