Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13h07
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 38 8e-04
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 31 0.12
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 30 0.16
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 0.37
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.48
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 1.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 2.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 2.6
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 3.4
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 3.4
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 5.9
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 5.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 7.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.9
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 37.9 bits (84), Expect = 8e-04
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 175 EQTDTATEDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASS 354
E+ D ED+RK LQ+KE ES + S+R L+ +LS +++ + + +T++ S
Sbjct: 568 EELDKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDLTENKKIKTKTLK-SY 626
Query: 355 SGT 363
SGT
Sbjct: 627 SGT 629
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 30.7 bits (66), Expect = 0.12
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 172 AEQTDTATEDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEAS 351
AE+ E +Q K HLES SLR L + S+ +++ V ET+E
Sbjct: 520 AEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWL 579
Query: 352 SSGT 363
S T
Sbjct: 580 DSNT 583
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 30.3 bits (65), Expect = 0.16
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 172 AEQTDTATEDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVE 345
AE+ E +Q K HLES SLR L + S+ +++ V ET+E
Sbjct: 520 AEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIE 577
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 29.1 bits (62), Expect = 0.37
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 217 QDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASSSGTEELRCLS 384
Q++E LESEV + AEL+ L+ ++ S+ + + L +E EL LS
Sbjct: 859 QNREALESEVATAEAELELLKEDFASENSKTEKILLAASEKKLVGKRLVSELTKLS 914
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.7 bits (61), Expect = 0.48
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 199 DMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSL 318
D+R+ L E + L LR + L T E QKSE+ +L
Sbjct: 608 DLREQLHVSETQRTLFLELRQRCKNLMTSIEEQKSELSNL 647
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.1
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 199 DMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQ-SLQLLVNETVEASSSGTEELR 375
+++ + + EHL S++ +L AE ++ + N+ SE + SLQ L N E + +L+
Sbjct: 540 ELQTEISNSEHLSSQLSTLAAE-KEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQLK 598
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 EQTDTATEDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLL---VNE-TV 342
E T + + + + L+ +++ AEL +L + K+EIQ ++L +NE ++
Sbjct: 964 ENNATVLSEKAEFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEMRLTNQKMNEKSI 1023
Query: 343 EASSSGTEELRCLSKRNLE 399
+ S +E L+ + K E
Sbjct: 1024 QQEGSLSESLKRVKKLERE 1042
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 223 KEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNET-VEASS 354
K ESE SL LQ+L+ +E +++ SLQ + ++ +E SS
Sbjct: 807 KVKFESEKESLSLSLQKLKESNEKMSNDLHSLQKSLEKSGIEYSS 851
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 2.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 263 NYSSCKPSVKIRNLRFKAYSCLLMKLWRLP 352
NYSS +PS+++++ ++ + ++ L LP
Sbjct: 187 NYSSGRPSIRLQSTQYFEHGLFILDLIHLP 216
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 163 NMSAEQTDTATEDMRKMLQDKEHLESEVLSLRAELQQLQT-------LSENQKSEIQSLQ 321
N+S ++ +T L +K + +L L + +QQL+ + ++ S+I ++
Sbjct: 419 NLSKDKANTLCAQCSVYLSEKYQQQQSLLQLESNIQQLENEKKAAKLIEKDLLSQISHVK 478
Query: 322 LLVNETVEASSSGTEELRCLS 384
L + ++A +++R L+
Sbjct: 479 LQFEQQIKAHHYAKDQVRNLN 499
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 226 EHLESEVLSLRAELQQLQTLSEN--QKSEIQSLQLLVNETVEASSS 357
EHL E+ R E+Q L+ S+N Q+S S + +T + ++
Sbjct: 442 EHLRKELTQARKEIQILRHTSQNGDQESNESSKNAITTKTTDKGNN 487
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.4 bits (53), Expect = 4.5
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = +1
Query: 31 QFCMFSICISQVFHSQIILKE---CRVRNNVEKQYFMKPSLAFAC*INMSAEQTDTATED 201
+ C FS CI Q+ HS L+E C + +E Y K A I E D E
Sbjct: 208 RICCFSPCIEQIQHSAEALRELGWCDI-EMIEVDY--KQWAARKSRIVHIDEAIDRLKEV 264
Query: 202 MRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASSSGTEELRCL 381
R+ ++ E R ++++ Q LS + K E Q ++ E + S+ T
Sbjct: 265 KRRRIEGFE---------RRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKPVT 315
Query: 382 SKR 390
+KR
Sbjct: 316 NKR 318
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 33 VLHVFNLYFSSLSFTNNFERVSSAK*CRKAIFY 131
V+ + ++F+ LSF N + + +K CR +FY
Sbjct: 212 VIFICYIFFTVLSFFNVPDAIVYSKLCRGLMFY 244
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 238 SEVLSLRAELQQLQTLSENQKSEIQSLQLLVNE 336
S V + ++ L +S NQ+SE +S +L VNE
Sbjct: 498 SNVRNDESKANSLSEISYNQQSECRSSELNVNE 530
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 5.9
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +1
Query: 160 INMSAEQTDTATEDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNET 339
+ + +Q T ++ +L DKE + +++ +L+ S +Q E+Q Q E
Sbjct: 125 LKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQHTQ---QEK 181
Query: 340 VEASSSGTEELRCLSKRN 393
++ EL+ L+++N
Sbjct: 182 ASLQTNYEFELQKLTQKN 199
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 196 EDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKS 303
+++ ++ DKE L +V +L AEL L+ S Q S
Sbjct: 1528 KEIHELRSDKEGLVQQVQNLSAELAALREHSPTQGS 1563
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 7.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 208 KMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASSSGTEELRCLSK 387
K ++D+ + V S R QLQT++EN S++ L N +E +++R +K
Sbjct: 282 KKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIE-LKNTALEEEHGDLQQIRGKAK 340
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 241 EVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASSSGTEE 369
E SL+ + +++ E ++ E + LQ ++NE EA G+E+
Sbjct: 35 EEASLQRTVPLVESGVEKEEEEEKHLQQVINEAHEAIVRGSEK 77
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 7.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +1
Query: 196 EDMRKMLQDKEH----LESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASSS 357
E R+ +++ EH SEV L E+ LQT EN K + + +N + +S
Sbjct: 87 EGFREFMENLEHRYEMTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNS 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,807
Number of Sequences: 5004
Number of extensions: 29610
Number of successful extensions: 115
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -