Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13g19
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 31 0.18
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 28 1.3
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 1.7
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.0
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 4.0
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 4.0
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 5.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.2
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 5.2
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.9
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 9.1
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.1
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 30.7 bits (66), Expect = 0.18
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 212 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNINYILNVMPVMXDERKMSKRKKXVI 382
N+++ +L+ + + N+D L+A VNFL K N ++ V M + +KR + ++
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202
Query: 383 NNN 391
++N
Sbjct: 203 DHN 205
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/68 (19%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +2
Query: 215 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNINYILNVMPVMXDERKMSKRKKXVIN 385
E + +S S++ + +++A++N ++ ++IN++ + + ++ K + K+ V+
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480
Query: 386 NNKYILFN 409
K +LF+
Sbjct: 481 RIKQLLFS 488
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +2
Query: 353 KMSKRKKXVINNNKYILFNS---WYTKIKQPEWPSSPAMWDLVKNTPELADFV 502
K + +K V+ N IL NS W IK+P S P D N +L +
Sbjct: 923 KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 394 FIVVNHXLLAFGHFAFVXHDRHYVEDIVNVLFFQEIYNSN*LVHVGFVVRARFQFIQQLF 215
FI+ LL F F H V + V FFQ ++ S L + G + F +Q+ +
Sbjct: 172 FIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGSTPLANAGGTISDLFTPVQRTY 231
Query: 214 I 212
+
Sbjct: 232 V 232
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 212 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 319
NEK ++ + +S N+S + QL A + L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 359 SKRKKXVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 490
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 474 KTRPNWQILCSFLITLKRWVKK-WPTDRHRRLQATTQTIPASK 599
KT Q L F++ K + + WP RHR + T+++ +S+
Sbjct: 262 KTGSFQQFLDGFVVASKFFAQHPWPGTRHRETREYTESVASSE 304
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 143 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEK--KNINY 316
L+ + + ++P T+T + ++++ ES+S + + D + + LEK + +N
Sbjct: 1243 LELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNA 1302
Query: 317 ILNVMPVMXDERK 355
LN + +E K
Sbjct: 1303 SLNPLQTEINELK 1315
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = +2
Query: 137 KGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
+ L+K+N+ PE+ +S + +LL L S N + + + L + ++
Sbjct: 394 ESLRKTNLSVKPEEITSRPHPLSQRVAELLYSLSMLSVNVVEAEPVARSASRLAQDYVSM 453
Query: 317 ILNVMPVMXDERKMSK 364
+ N+ + D+R+ S+
Sbjct: 454 LQNLCKTVNDKRRQSR 469
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 6.9
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Frame = +2
Query: 101 KNISSRIXAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIA 280
KN+ + AG + L + +VN+ ST N+ L+ L ++Y MD
Sbjct: 241 KNVPPIVGAGAIENLDANLLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFLMD---- 296
Query: 281 IVNFLEKKNI-NYILNVMPVMXDERKMSKRKKXVINNN--KYILFNSWYTKIKQPEW 442
+ F +NI Y+ + + DE +SK +I + K +S+ KI PEW
Sbjct: 297 -IGF---ENIEQYLRELGKSLVDE--LSKLGVTIIGSKDPKKRSTHSYVAKILNPEW 347
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -1
Query: 508 NEHKICQFGRVFHQIPHGRATRPLGLLDLSV 416
N +K+C FG H IP + L+ +
Sbjct: 178 NSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 381 LTTINTFCLTVGTLRSSSPSGLVARPC 461
L T+N TVG + S GL+A+ C
Sbjct: 219 LATLNILAQTVGFMAGSFLGGLLAKAC 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,718
Number of Sequences: 5004
Number of extensions: 50727
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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