Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g19
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   4.1  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   5.4  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   7.1  
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332...    27   9.4  

>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 368 KKXVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 502
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 416 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 526
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 532 THLFSVIKNEHKICQFGRVFHQIP 461
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>04_03_0743 +
           19231835-19232204,19232889-19233061,19233200-19233297,
           19233970-19234107,19234266-19234455,19234875-19235007,
           19235095-19236029
          Length = 678

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 629 CVGKHRSLSFFARWNCLR 576
           C+GK+ S+SFF  WNC +
Sbjct: 219 CLGKYLSISFF--WNCFK 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,318
Number of Sequences: 37544
Number of extensions: 313212
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)