Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g19
         (637 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.        32   2.0  
AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.            31   4.5  

>BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMXD 346
           M E++   E A + +  K+L K   S   +S   +   + + LEK NI Y   ++  M  
Sbjct: 30  MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88

Query: 347 ERKMSKRKK 373
           ++K  K+KK
Sbjct: 89  QKKKKKKKK 97


>AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.
          Length = 1011

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 25/99 (25%), Positives = 46/99 (46%)
 Frame = +2

Query: 74  TNCQAVGH*KNISSRIXAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
           T+   + H KNI + I   ++KG  K+++ N   ++      +V   E  + +L+S    
Sbjct: 69  TDSPMLTHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126

Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMXDERKMSKRK 370
           K NM  L  I+++   K    + + M V   +  +S RK
Sbjct: 127 KQNM-MLPRILSYAHMKEPPEVKHAMEVNKHQSNISYRK 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,527,875
Number of Sequences: 237096
Number of extensions: 1745444
Number of successful extensions: 3275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3275
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)