Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g19
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024839-1|AAF60832.2|  232|Caenorhabditis elegans Thaumatin fam...    31   0.69 
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    29   2.8  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    27   8.5  

>AC024839-1|AAF60832.2|  232|Caenorhabditis elegans Thaumatin family
           protein 5 protein.
          Length = 232

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 186 EDCCSGMFTMXDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 58
           ++CC G F   D C+   R A +  D    CPTA+ +  D+ T
Sbjct: 179 QECCRGAFGTPDKCRQ-SRTAMLFKDA---CPTAYSYAYDDAT 217


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +2

Query: 149 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 328
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  + + L  
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELTS 179

Query: 329 MPVMXDERKMSKR 367
                 + K  +R
Sbjct: 180 CQNRFKQMKQERR 192


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
           AA  KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 34  AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 188 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMXDERKMS 361
           T +   CK +K    L S    + N+D  I  V+F +KK I   +  +V+    DE    
Sbjct: 33  TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92

Query: 362 KRKKXVINNNKYILFN 409
           K       + +Y++ N
Sbjct: 93  KEAYEEEESREYVIEN 108


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 451 ATRPLGLLD--LSVPTVKQNVFIVVNHXLLAFGHFAFVXHDRHY 326
           A  PLG+L     VPT  Q  F+  N  ++   HF  V  +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMXDERKMSKRKKXVINNNKYILFN 409
           SSS  KS       + N   + +   +   M  + D+  M++ K  + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMXDERKMSKRKKXVINNNKYILFN 409
           SSS  KS       + N   + +   +   M  + D+  M++ K  + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMXDERKMSKRKKXVINNNKYILFN 409
           SSS  KS       + N   + +   +   M  + D+  M++ K  + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMXDERKMSKRKKXVINNNKYILFN 409
           SSS  KS       + N   + +   +   M  + D+  M++ K  + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320  LNVMPVMXDERKMSKRKKXVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 481
            ++++P M    K S  K+      +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
 Frame = +2

Query: 119 IXAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLI-----AI 283
           I  G  +G+ +   + + E   +T      K E+ LN     S  ++  D++       I
Sbjct: 9   IVTGASRGIGRGIALQLGEA-GATVYITGRKPEESLNSKVGLSGLEATADEITKRGGKGI 67

Query: 284 VNFLEKKNINYILNVMPVMXDERKMSKRKKXVINNNKYILFNSWYTKIKQPEWPSSPAMW 463
             F++ +N+  + N   V+  E +    +  ++ NN Y    +    + +P + + P +W
Sbjct: 68  ARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYVW 124

Query: 464 DLVKN 478
           D + N
Sbjct: 125 DTINN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,898
Number of Sequences: 27780
Number of extensions: 298786
Number of successful extensions: 801
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)