Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g18
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   2.4  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   5.5  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   5.5  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    25   9.7  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 625 ISTGAVSSKFDVVRAVCSDIGK 560
           + TG  SS FD+  A C ++GK
Sbjct: 273 LGTGKGSSVFDIYHAFCKEVGK 294


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 576 VPTLARVFLIRSAVNLAAGFWYQHSFITFDIPDS 475
           VP++ R FL RS +NL   +++  + +    P+S
Sbjct: 180 VPSIVRPFLKRSLINLGFLYYFYMAAVAIFCPNS 213


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 78  SPVKLQKMSLNPNSSSPF 131
           SP+  Q  SLNP++ SPF
Sbjct: 263 SPLNYQNSSLNPSTPSPF 280


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 148 SNTHISKGEELFGLSDIFCNFTGEP--FNV*NLD 53
           SN+H+  G +L+G SD   +F      F V N+D
Sbjct: 92  SNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVD 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,857
Number of Sequences: 5004
Number of extensions: 56289
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)