Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g18
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     31   0.61 
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886...    28   7.6  

>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 153 FVYVY-NGK*VDYYQSRQSDFWKIIGKSEKRIIDFVFHWQ 269
           F++V  N K +D+Y+S Q   W+  GK E+ + + + H Q
Sbjct: 260 FLFVRSNDKTLDFYRSWQQGRWRFFGKHEQDVFNLIKHEQ 299


>09_06_0146 +
           21186889-21187178,21187321-21187435,21188595-21188686,
           21188839-21188952,21189139-21189193,21189348-21189458,
           21190226-21190279,21190362-21190537,21190623-21190730,
           21191332-21191405,21191500-21191675,21192169-21192264,
           21192534-21192614,21192713-21192766,21193246-21193380,
           21193453-21193533
          Length = 603

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 485 ISKVMKECWYQNPAARLTALRIKKTLANVGTNGAD 589
           +S+++++CW Q PA R     I +TL  +     D
Sbjct: 546 LSELLQKCWQQEPAERPDFSEILETLQRIAEEVGD 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,986
Number of Sequences: 37544
Number of extensions: 312001
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)