Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g18
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    31   0.72 
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    31   0.72 
Z35719-5|CAE45044.1|  296|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81481-7|CAB63437.3|  511|Caenorhabditis elegans Hypothetical pr...    28   5.1  
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        28   5.1  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    28   5.1  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    28   5.1  
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81523-11|CAB04247.2|  403|Caenorhabditis elegans Hypothetical p...    27   8.9  

>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +2

Query: 476 LSGISKVMKECWYQNPAARLTALRIKKTLANVGTN 580
           L+ +SK+M++ W+  P  R +AL++KK +A +  N
Sbjct: 574 LNELSKLMEDSWHSIPHFRHSALKLKKEMAELIKN 608


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +2

Query: 476 LSGISKVMKECWYQNPAARLTALRIKKTLANVGTN 580
           L+ +SK+M++ W+  P  R +AL++KK +A +  N
Sbjct: 574 LNELSKLMEDSWHSIPHFRHSALKLKKEMAELIKN 608


>Z35719-5|CAE45044.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.7 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 247 IIRFSDLPIIFQKSDCRL***STH-LPL*TYTKTSNTHISKGEELFGLSDIFCNFTGEPF 71
           I+ FS+L      SDC     ST+ +P  T +  +  HIS G E+   + +F N TG+ F
Sbjct: 22  ILDFSNLKT---NSDCPFFCSSTNKMPCQTKSNPTELHISTGREIVQRNFVFRNTTGKDF 78


>Z81481-7|CAB63437.3|  511|Caenorhabditis elegans Hypothetical
           protein C38D9.6 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 262 WNTKSIIRFSDLPIIFQ--KSDCRL 194
           +NTKSI++F +  +I+Q  K DC L
Sbjct: 265 YNTKSILQFDEKEVIYQDKKDDCNL 289


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 485 ISKVMKECWYQNPAARLTALRIKKTL 562
           I +++K CW  NP+AR T+   +K +
Sbjct: 561 IMEIIKTCWNGNPSARFTSYICRKRM 586


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 485 ISKVMKECWYQNPAARLTALRIKKTL 562
           I +++K CW  NP+AR T+   +K +
Sbjct: 560 IMEIIKTCWNGNPSARFTSYICRKRM 585


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 485 ISKVMKECWYQNPAARLTALRIKKTL 562
           I +++K CW  NP+AR T+   +K +
Sbjct: 561 IMEIIKTCWNGNPSARFTSYICRKRM 586


>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
           protein T03D8.5 protein.
          Length = 1012

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 485 ISKVMKECWYQNPAARLTALRIKKTLANVGTN 580
           +S ++++CW +NP  R T+ +IK  + ++  N
Sbjct: 721 MSLLVRDCWNENPDQRPTSEQIKTLMKSMNHN 752


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 494 VMKECWYQNPAARLTALRIKKTLANVGTNGAD 589
           ++K+CW +NP  R +A  + K L ++  N  D
Sbjct: 801 LVKDCWCENPEERPSAENVCKVLFDMTPNTED 832


>Z81523-11|CAB04247.2|  403|Caenorhabditis elegans Hypothetical
           protein F32H2.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 516 KIRRPG*LRSESRKPLPMSEQTARTTSNFEL 608
           K + PG L ++S +P  +S +TAR++SN  L
Sbjct: 288 KAQSPGLLTAQSAEPNLLSTRTARSSSNTSL 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,761
Number of Sequences: 27780
Number of extensions: 319444
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)