Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g13
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.7  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   6.2  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   8.2  

>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 608 SVQYNFSIIYQL*NYTILYCVMSYLKYELLHVSTYL 715
           +VQY    +  L +  IL+ +  Y  Y   H+STYL
Sbjct: 97  NVQYFILALSMLIDRPILFSLAPYAIYATFHISTYL 132


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 410 YHHNKANFYSSSICKGMPSQ-LYPQ 339
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 410 YHHNKANFYSSSICKGMPSQ-LYPQ 339
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 65  CFAKSLKMYVVSNLVKVTIPNYLSSLP 145
           C  KSL++Y +SN ++   PN +S+LP
Sbjct: 8   CEEKSLQLYPLSNKIRHVNPN-ISALP 33


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 IPNYLSSLPIPDSVGGWFR 175
           I NYL ++ IPD V  W++
Sbjct: 21  IVNYLKTINIPDDVTEWYK 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,629
Number of Sequences: 5004
Number of extensions: 59219
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)