Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g08
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical pr...    36   0.025
U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    27   6.7  
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    27   8.8  

>Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical
           protein F15B9.6 protein.
          Length = 453

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 474 LLYNTVLTAILKQNNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNY 325
           LLY  V+  I++ N P +V     + +I+  NLG CP   DR+K C   +
Sbjct: 4   LLYFIVIL-IIQANVPGSVQDSPEAYNILEPNLGGCPRTSDRIKFCSAKF 52


>U21309-3|AAN73880.2|  143|Caenorhabditis elegans Hypothetical
           protein C13B9.1 protein.
          Length = 143

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 406 IFSNYIKWIVLFENCGQNCIVQKKSAI 486
           I+ N  KW+ L  NC +N I+Q K ++
Sbjct: 79  IYGNLKKWLELILNCYRNIIIQTKKSM 105


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -1

Query: 477 FLLYNT-VLTAILKQ---NNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNYGGIPP 310
           F  YNT VL +ILK+   + P  ++    +  + +R + + PN + +V CC      +P 
Sbjct: 309 FHKYNTHVLASILKEYLRSIPGKILLSG-NYELWMREIADEPNTEKKVSCCRALLSHLPT 367

Query: 309 GH 304
            H
Sbjct: 368 SH 369


>Z81067-5|CAD92378.1|  965|Caenorhabditis elegans Hypothetical
           protein F23A7.7 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 406 IFSNYIKWIVLFENCGQNCIVQKKSAI 486
           I+ N  KW+ L  NC  N I+Q K ++
Sbjct: 203 IYGNLKKWLELILNCYGNIIIQTKKSM 229


>Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical
           protein M03C11.2 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 238 QQVQTIQRINCAPIRSRRRICEFTRKRKQPA 146
           +Q+Q+ +R+     ++RR + E +RKRK PA
Sbjct: 106 EQIQSRERLQSRIDQARRGMVEVSRKRKAPA 136


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 465 NTVLTAILKQNNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNYGGIPPGHVMCPPR 286
           NTV+    K++  F+  A++ S   IV   G  P   D  K  + +  GIPP     P  
Sbjct: 442 NTVIPT--KKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQI 499

Query: 285 EITKKV 268
           E+T ++
Sbjct: 500 EVTFEI 505


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = -1

Query: 315 PPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLHAR 136
           PP  +     + TK+       V NP + +R S  + RQ+    A  S +   +++  +R
Sbjct: 32  PPAEITIKLEKDTKRKITIISEVENPKRARRGSADLRRQAIVNSAIRSAQSTASSRSRSR 91

Query: 135 DASQ 124
             S+
Sbjct: 92  SRSR 95


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = -1

Query: 315 PPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLHAR 136
           PP  +     + TK+       V NP + +R S  + RQ+    A  S +   +++  +R
Sbjct: 32  PPAEITIKLEKDTKRKITIISEVENPKRARRGSADLRRQAIVNSAIRSAQSTASSRSRSR 91

Query: 135 DASQ 124
             S+
Sbjct: 92  SRSR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,942
Number of Sequences: 27780
Number of extensions: 247714
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)