Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g01
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...   202   3e-53
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   3.4  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   4.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.8  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score =  202 bits (494), Expect = 3e-53
 Identities = 88/178 (49%), Positives = 119/178 (66%)
 Frame = +1

Query: 151 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 330
           ILCC+C VP   N + MC+ C++   DIT GIP+++T+  CR CERY+QPP+ W++  LE
Sbjct: 22  ILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLE 81

Query: 331 SREXXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFT 510
           SRE            ++V+L+DA F WTEPHS+RIKVKLTVQ E     +LQQ+F VEF 
Sbjct: 82  SRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFY 141

Query: 511 IQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHD 684
           + +  C  C R+     W+A+ QVRQ+  +++TF YLEQ+ILKHKAH NT+ IK   D
Sbjct: 142 VNNTQCPDCARTYTPHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKD 199


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 513 NCKFNYKCLLEHCSSD 466
           NCKF  KC LEH   D
Sbjct: 77  NCKFGSKCALEHVLPD 92


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 192 LKYVCSLFKGSCRHHRWNTQ 251
           LK+ C++F+G+ R H + T+
Sbjct: 220 LKHACTMFRGTHRFHSYTTE 239


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = -3

Query: 252 FGYSICDVYMSP*TSYTHI*G--VCFYRYSTLTAQYSC 145
           F  S+C     P  SY    G   C Y YSTL A   C
Sbjct: 204 FTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTLFAARCC 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,404
Number of Sequences: 5004
Number of extensions: 55921
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)