Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g01
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S. cerevi...   253   5e-67
AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.      253   5e-67

>BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S.
           cerevisiae) protein.
          Length = 503

 Score =  253 bits (619), Expect = 5e-67
 Identities = 113/195 (57%), Positives = 145/195 (74%), Gaps = 1/195 (0%)
 Frame = +1

Query: 103 MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGC 282
           MEY A E+   S    ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C
Sbjct: 1   MEYMA-ESTDRSPG-HILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQC 58

Query: 283 ERYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQG 459
           +RY QPP  W+ CALESRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q 
Sbjct: 59  QRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQK 118

Query: 460 EVIGGAVLQQTFIVEFTIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILK 639
           EV+ GA+LQQ F+V++ +Q QMC  CHR EA+D+W+A++QVRQ+  ++KTFYYLEQLILK
Sbjct: 119 EVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILK 178

Query: 640 HKAHENTLGIKPKHD 684
           +  H+NTL IK  HD
Sbjct: 179 YGMHQNTLRIKEIHD 193


>AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.
          Length = 503

 Score =  253 bits (619), Expect = 5e-67
 Identities = 113/195 (57%), Positives = 145/195 (74%), Gaps = 1/195 (0%)
 Frame = +1

Query: 103 MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGC 282
           MEY A E+   S    ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C
Sbjct: 1   MEYMA-ESTDRSPG-HILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQC 58

Query: 283 ERYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQG 459
           +RY QPP  W+ CALESRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q 
Sbjct: 59  QRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQK 118

Query: 460 EVIGGAVLQQTFIVEFTIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILK 639
           EV+ GA+LQQ F+V++ +Q QMC  CHR EA+D+W+A++QVRQ+  ++KTFYYLEQLILK
Sbjct: 119 EVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILK 178

Query: 640 HKAHENTLGIKPKHD 684
           +  H+NTL IK  HD
Sbjct: 179 YGMHQNTLRIKEIHD 193


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,188,680
Number of Sequences: 237096
Number of extensions: 1899737
Number of successful extensions: 3575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3573
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)