Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13g01
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...   217   5e-57
Z29094-6|CAD45581.1|  457|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z29094-5|CAA82336.1|  465|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha ...    29   4.1  
AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta...    29   4.1  
AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alph...    29   4.1  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z49128-6|CAA88957.1|  621|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score =  217 bits (531), Expect = 5e-57
 Identities = 95/176 (53%), Positives = 123/176 (69%), Gaps = 1/176 (0%)
 Frame = +1

Query: 151 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 330
           I CC+C V IE NP+NMC  CLR+ VDIT+GI +Q T++ C+ C+RY  PPS W+   LE
Sbjct: 13  IACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCDRYFVPPSAWMRAELE 72

Query: 331 SREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEF 507
           S+E             ++V+L DA F WTE HSKRIKVK+T+Q EV    +LQQ  +VEF
Sbjct: 73  SKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEF 132

Query: 508 TIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKP 675
           T+  Q+CD C R+EA+D+WRA VQVRQRA  +KT +YLEQL+LKH AH+   G+KP
Sbjct: 133 TVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKP 188


>Z29094-6|CAD45581.1|  457|Caenorhabditis elegans Hypothetical
           protein C07A9.7b protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 151 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQP 300
           ++C +  + +  +P N C  CL+        I + A+  +C+ CE + +P
Sbjct: 43  VVCVETGITVNVDPQN-CYRCLK--------ITENASFAYCKNCEEFYEP 83


>Z29094-5|CAA82336.1|  465|Caenorhabditis elegans Hypothetical
           protein C07A9.7a protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 151 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQP 300
           ++C +  + +  +P N C  CL+        I + A+  +C+ CE + +P
Sbjct: 43  VVCVETGITVNVDPQN-CYRCLK--------ITENASFAYCKNCEEFYEP 83


>U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha
           family protein 2 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 265 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 119
           + ++ W F   C H+    PL  L    +GL+  VQHTD  +    C    +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288


>AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta
           binding domain proteinprotein.
          Length = 531

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 265 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 119
           + ++ W F   C H+    PL  L    +GL+  VQHTD  +    C    +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288


>AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alpha 2
           protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 265 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 119
           + ++ W F   C H+    PL  L    +GL+  VQHTD  +    C    +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 106 EYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITD 240
           E+   E+  + +  R+  C+   P + N +NM V   R+  DIT+
Sbjct: 265 EHKRKESLDIDSTPRLASCEYFTPWDTNGTNMQVRTSRSAFDITN 309


>Z49128-6|CAA88957.1|  621|Caenorhabditis elegans Hypothetical
           protein M03C11.7 protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 436 KVKLTVQGEVIGGAVLQQTFIVEFTIQHQMCDACHRSEAQDYWRALVQVRQRANNRK 606
           KVK++    V+G   +Q    +E  ++ QM +   + E  +  R L + ++RA   K
Sbjct: 411 KVKISNLMRVLGNEAIQDPTKMEAQVRKQMAERLKKHETLNAERKLTEDQKRAKKTK 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,377
Number of Sequences: 27780
Number of extensions: 318639
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)