Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f23
         (198 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY040219-1|AAK76739.1| 1382|Homo sapiens ATP-binding cassette tr...    27   8.4  
AF411579-1|AAL99902.1| 1344|Homo sapiens ATP-binding cassette pr...    27   8.4  
AF367202-1|AAK58869.1| 1382|Homo sapiens ATP-binding cassette pr...    27   8.4  
AF352582-1|AAK19755.1| 1382|Homo sapiens ATP-binding cassette tr...    27   8.4  

>AY040219-1|AAK76739.1| 1382|Homo sapiens ATP-binding cassette
            transporter sub-family C member 11 protein.
          Length = 1382

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 71   DLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 184
            D  P+GR   CF   L  L ++L  +S QF V+S + +
Sbjct: 912  DTIPIGRLLNCFAGDLEQLDQLLPIFSEQFLVLSLMVI 949


>AF411579-1|AAL99902.1| 1344|Homo sapiens ATP-binding cassette protein
            C11 isoform A protein.
          Length = 1344

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 71   DLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 184
            D  P+GR   CF   L  L ++L  +S QF V+S + +
Sbjct: 912  DTIPIGRLLNCFAGDLEQLDQLLPIFSEQFLVLSLMVI 949


>AF367202-1|AAK58869.1| 1382|Homo sapiens ATP-binding cassette protein
            C11 protein.
          Length = 1382

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 71   DLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 184
            D  P+GR   CF   L  L ++L  +S QF V+S + +
Sbjct: 912  DTIPIGRLLNCFAGDLEQLDQLLPIFSEQFLVLSLMVI 949


>AF352582-1|AAK19755.1| 1382|Homo sapiens ATP-binding cassette
            transporter MRP8 protein.
          Length = 1382

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 71   DLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 184
            D  P+GR   CF   L  L ++L  +S QF V+S + +
Sbjct: 912  DTIPIGRLLNCFAGDLEQLDQLLPIFSEQFLVLSLMVI 949


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,475,867
Number of Sequences: 237096
Number of extensions: 418065
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)