Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f22
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.0  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   4.0  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   5.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.1  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 127  NNIIFALSLC*IVNYCV*QYS*QRLSFFY 41
            N+I   LS+C  +N CV  Y    LSF+Y
Sbjct: 1301 NSIFLILSICYTINICVKVYG---LSFYY 1326


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 208 EITSASLGPHVTNPQVISNISQTKL 134
           EIT  SLGP+  N  V++++ QT L
Sbjct: 40  EITRTSLGPNGKNKIVVNHLQQTFL 64


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +3

Query: 375 QVKIQGQNSEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFS- 551
           Q ++Q + SEM+ +A +  L  T ++      + +EG  R  M S   + I    ++   
Sbjct: 271 QPEVQPKLSEMVETALDVLLNATNEDTSKGFFLLIEG-SRIDMASHNNDPIAHVYEVMEY 329

Query: 552 KKVFEVASSDLINMGITVVS 611
            + FE+AS+ +   G +++S
Sbjct: 330 NRAFEIASAFVEKNGGSLIS 349


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 533  FVYFLDRHRSHYSTLVTLQRHQGYVLNLLLRFTEKLLTRGEQHLGILT--LNFDLSDSSN 360
            F Y +      Y+    LQR + ++   LLR   +   R E  +G +T  L+  +     
Sbjct: 851  FAYAISNFAMTYAMEAVLQRIRYHLFRTLLRQDVEFFDRSENTVGAITTSLSTKIQSLEG 910

Query: 359  RNGHTL 342
             +G TL
Sbjct: 911  LSGPTL 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,212
Number of Sequences: 5004
Number of extensions: 56926
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)