Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f22
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 43 2e-04
10_08_0404 + 17653942-17654877,17656616-17657137 42 3e-04
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 42 5e-04
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 30 1.8
03_04_0212 + 18670122-18670326,18671946-18672385 30 1.8
03_02_0088 - 5558079-5558663,5558762-5559388,5559490-5559559,555... 29 2.3
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 29 3.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 3.1
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 28 5.4
03_05_0092 - 20714102-20717902 28 5.4
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346... 27 9.4
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 9.4
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787... 27 9.4
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 27 9.4
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 27 9.4
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 42.7 bits (96), Expect = 2e-04
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Frame = +3
Query: 171 FVTCGPNEALVISGC------CYSKPLLVPGGRAFVWPAIQSVQRISLNTMT---LQVES 323
FV G +E L I+G K + G + + A I + M+ L
Sbjct: 4 FVVAGASEYLAITGWGIDDVKLAKKAWVFAGQKCLKFDATPVSYDIDVQAMSSEKLPFRL 63
Query: 324 PTVYTSQGVP-ISVTGIAQVKIQGQNSEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAI 500
P YT P I + +++ L C++ ++ + + +EG R +
Sbjct: 64 PAAYTIGPSPKIKRNPVVDGPAPPADTQRRLEDCDEEAIRSPNHVIDLVKGVIEGETRVL 123
Query: 501 MGSMTVEEIYKDRKIFSKKVFEVASSDLINMGITVVSYTLKD 626
SMT+EEI++ K F ++VF+ L +G+ + S ++D
Sbjct: 124 ASSMTMEEIFQGTKKFKQQVFDQVQLALNELGLYIYSANVQD 165
>10_08_0404 + 17653942-17654877,17656616-17657137
Length = 485
Score = 42.3 bits (95), Expect = 3e-04
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Frame = +3
Query: 159 MTWGFVTCGPNEALVISGCCYSKPLLVPGGRAFVWPAIQSVQRISLNTMTLQVESPTVYT 338
M + + +E L I+G + L +A+V P Q R ++ + E + +
Sbjct: 1 MGFAYRIASASEYLAITGYGIADVKLAK--KAWVAPG-QRCTRFDISPVNYTFEVQAM-S 56
Query: 339 SQGVPISVTGIAQVKIQGQNSEMLLSACEQFL--GKTEQEIQHIALVTLEGHQRAIMGSM 512
++ +P + + + + + + LL + K + + +EG R + SM
Sbjct: 57 AEKLPFILPAVFTIGPRADDDDCLLRYAKLISPHDKLSHHVNELVKGVIEGETRVLAASM 116
Query: 513 TVEEIYKDRKIFSKKVFEVASSDLINMGITVVSYTLKDIRD 635
T+EEI++ K F + VFE +L G+ + + +K + D
Sbjct: 117 TMEEIFQGTKSFKQAVFENVQLELNQFGLIIYNANVKQLVD 157
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 453 IQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASSDLINMGITVVSYTLKDIR 632
++ + +EG R + SMT+EEI++ K F ++VF+ DL G+ + + +K +
Sbjct: 116 VKQLVKGVIEGETRVLAASMTMEEIFQGTKKFKQEVFDQVQLDLNKFGLYIYNANVKQLV 175
Query: 633 D 635
D
Sbjct: 176 D 176
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 342 DWYRQLVTPLEGSWCLEISVV---RSGSLAIQRLDHQGPGVAWNSSI 211
DW R LVT + G+ C + +V GS+ I + GP + +S +
Sbjct: 70 DWDRTLVTSMSGAPCSNLGLVPRDMHGSIPISTTNSSGPSIGVSSLV 116
>03_04_0212 + 18670122-18670326,18671946-18672385
Length = 214
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 491 LVTLQRHQGYVLNLLLRFTEKLLTRGEQHLGILTLNFDLSDSSNRNGHTL 342
L+T++ + N++ K + GE H I+ + FD+ D+S+ TL
Sbjct: 15 LMTVRDSNPWYANIVNYMVSKYIPLGENHQHIINIPFDVIDTSSHRAITL 64
>03_02_0088 -
5558079-5558663,5558762-5559388,5559490-5559559,
5559905-5559957
Length = 444
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 354 ISVTGIAQVKIQGQNSEMLLSACE--QFLGKTEQEIQHIALVTLEG 485
I+V +A ++ G++ EM C +G+TE ++ +AL +LEG
Sbjct: 92 ITVDNVAMLRCAGEHLEMT-EECRPGNLVGRTEAYLEEVALASLEG 136
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 207 SGCCYSKPLLVPGGRAFVWPA-IQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVK 383
+GC S + VP P I ++ +LQ SPT+ SQ P+S +
Sbjct: 488 TGCLSSLDMTVPSTMNSSRPVLIDQNSKLDDQFGSLQSSSPTMIMSQQFPVSRSSSV--- 544
Query: 384 IQGQNSEMLLSACEQF 431
+ S LLSAC +F
Sbjct: 545 LSSDFSPRLLSACPRF 560
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 614 IRHNCDSHVD*ITRRNFEHLFREYFSVFVY-FLDRHRSHYSTLVTLQ 477
+ H C SH D TR + ++F++ +Y FL+ R +S L +LQ
Sbjct: 1402 LEHICRSHADVETRNDTIKQTVQWFTMLMYAFLEHMRLQHSKLESLQ 1448
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 231 LLVPGGRAFVWPAIQSVQRISLNTMTLQVESPT 329
L+ PG +AFV+P + + SL + L S T
Sbjct: 82 LISPGSQAFVYPGLSPATQSSLRALLLSAASAT 114
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 431 KLLTRGEQHLGILTLNFDLSDSSNRNGHT 345
K + +G QHL IL L++ SDS +R T
Sbjct: 783 KGILKGMQHLNILELSWSSSDSQSREAST 811
>08_02_0370 -
16333471-16333526,16333821-16333912,16334553-16334671,
16335152-16335226,16335328-16335393,16335507-16335563,
16335640-16335689,16335774-16335944,16337057-16337183,
16337658-16338017
Length = 390
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 289 IRCTLWIAGHTKARPPGTRSGLE*QHPEITSASLG 185
+R IA AR PG R+GLE ++T S+G
Sbjct: 82 VRVASSIAPRRAARTPGGRAGLERGRDDLTPPSIG 116
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 214 HPEITSASLGPHVTNPQVISNISQTKLLYNNIIFALSLC*IVNYCV 77
HP+ S ++G + +PQ + N Q + LY +I+ + I YCV
Sbjct: 457 HPK--SFAVGLRIEHPQELINDIQGQGLYPKVIYDIDTIKITIYCV 500
>04_03_0498 +
16574250-16574312,16576576-16577457,16578624-16578714,
16578802-16578857,16579527-16579640
Length = 401
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 279 RSGSLAIQRLDHQGPGVAWNSSILKSRVLR*G 184
RSG L + RLD + ++ +++SR+LR G
Sbjct: 344 RSGRLIVPRLDPGSQKIIYDMGLIRSRLLRGG 375
>03_01_0611 +
4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 476 AGGSPTCYNGIYDGRGNIQR 535
+GGS CY I+DG+G I +
Sbjct: 916 SGGSQDCYIKIHDGKGTIDK 935
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 269 DPERTTDISKHHDPSSGVTNCLYQSGCAHFGYWNRSGQNSRSEF 400
D +R T I +DP V L GC F N++ Q+S +F
Sbjct: 141 DADRGTFIICEYDPPGNVLGVLAYGGCGRF---NQTAQSSPQDF 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,361
Number of Sequences: 37544
Number of extensions: 378418
Number of successful extensions: 1034
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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