Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f22
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 40 0.001
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 38 0.008
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 38 0.008
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 38 0.008
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 38 0.008
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 38 0.008
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 35 0.042
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 34 0.098
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 34 0.098
Z81537-4|CAB04375.2| 669|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 29 3.7
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 4.9
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 4.9
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 4.9
U61956-3|ABA03115.1| 402|Caenorhabditis elegans Hypothetical pr... 28 4.9
U61956-2|ABA03113.1| 440|Caenorhabditis elegans Hypothetical pr... 28 4.9
U61956-1|ABA03114.1| 408|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF039710-3|AAD32272.1| 347|Caenorhabditis elegans Serpentine re... 27 8.5
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/129 (24%), Positives = 57/129 (44%)
Frame = +3
Query: 246 GRAFVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNSEMLLSACE 425
G FV P I+S ++ L T++ V + T V SV + +I N+ + ++ E
Sbjct: 119 GIFFVLPCIESYTKVDLRTVSFSVPPQEILTKDSVTTSVDAVIYYRIS--NATVSVANVE 176
Query: 426 QFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASSDLINMGITV 605
+ +A TL R ++G+ ++ EI DR+ + + + + GI V
Sbjct: 177 N----AHHSTRLLAQTTL----RNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKV 228
Query: 606 VSYTLKDIR 632
+KD+R
Sbjct: 229 ERVEIKDVR 237
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Frame = +3
Query: 234 LVPGGRA-----FVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQN 398
L+PGG F+ P I + +++ L ++ +V + + V ++V + +I N
Sbjct: 83 LMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRIS--N 140
Query: 399 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASS 578
+ + ++ E T+ +A TL R I+G+ T+ E+ DR+ S ++
Sbjct: 141 ATISVTNVEDAARSTKL----LAQTTL----RNILGTKTLAEMLSDREAISHQMQTTLDE 192
Query: 579 DLINMGITVVSYTLKDIR 632
G+ V +KD+R
Sbjct: 193 ATEPWGVKVERVEVKDVR 210
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Frame = +3
Query: 234 LVPGGRA-----FVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQN 398
L+PGG F+ P I + +++ L ++ +V + + V ++V + +I N
Sbjct: 158 LMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRIS--N 215
Query: 399 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASS 578
+ + ++ E T+ +A TL R I+G+ T+ E+ DR+ S ++
Sbjct: 216 ATISVTNVEDAARSTKL----LAQTTL----RNILGTKTLAEMLSDREAISHQMQTTLDE 267
Query: 579 DLINMGITVVSYTLKDIR 632
G+ V +KD+R
Sbjct: 268 ATEPWGVKVERVEVKDVR 285
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Frame = +3
Query: 234 LVPGGRA-----FVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQN 398
L+PGG F+ P I + +++ L ++ +V + + V ++V + +I N
Sbjct: 158 LMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRIS--N 215
Query: 399 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASS 578
+ + ++ E T+ +A TL R I+G+ T+ E+ DR+ S ++
Sbjct: 216 ATISVTNVEDAARSTKL----LAQTTL----RNILGTKTLAEMLSDREAISHQMQTTLDE 267
Query: 579 DLINMGITVVSYTLKDIR 632
G+ V +KD+R
Sbjct: 268 ATEPWGVKVERVEVKDVR 285
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Frame = +3
Query: 234 LVPGGRA-----FVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQN 398
L+PGG F+ P I + +++ L ++ +V + + V ++V + +I N
Sbjct: 158 LMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRIS--N 215
Query: 399 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASS 578
+ + ++ E T+ +A TL R I+G+ T+ E+ DR+ S ++
Sbjct: 216 ATISVTNVEDAARSTKL----LAQTTL----RNILGTKTLAEMLSDREAISHQMQTTLDE 267
Query: 579 DLINMGITVVSYTLKDIR 632
G+ V +KD+R
Sbjct: 268 ATEPWGVKVERVEVKDVR 285
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Frame = +3
Query: 234 LVPGGRA-----FVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQN 398
L+PGG F+ P I + +++ L ++ +V + + V ++V + +I N
Sbjct: 158 LMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRIS--N 215
Query: 399 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASS 578
+ + ++ E T+ +A TL R I+G+ T+ E+ DR+ S ++
Sbjct: 216 ATISVTNVEDAARSTKL----LAQTTL----RNILGTKTLAEMLSDREAISHQMQTTLDE 267
Query: 579 DLINMGITVVSYTLKDIR 632
G+ V +KD+R
Sbjct: 268 ATEPWGVKVERVEVKDVR 285
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 35.1 bits (77), Expect = 0.042
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Frame = +3
Query: 273 QSVQRISLNTMTLQVESPTVYTSQGV----PIS--VTGIAQVKIQGQNSEMLLSACEQFL 434
Q +Q + N L + PTV + PIS +G+A +K QG+ E + +L
Sbjct: 396 QDLQALRANQAQLSLSIPTVAQTSSFAAISPISPCFSGVAPMKTQGE--EHFIEEVSPYL 453
Query: 435 GKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKV--FEVASS 578
E+ + + E H IM E ++ + K+F KK+ FE+A S
Sbjct: 454 KNYEEALMYWE----ENHNIEIMNPEWPETVFVEIKVFKKKIFMFEMAES 499
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 33.9 bits (74), Expect = 0.098
Identities = 31/129 (24%), Positives = 52/129 (40%)
Frame = +3
Query: 246 GRAFVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNSEMLLSACE 425
G F+ P I + I L + V S + + V +SV + K+ + ++
Sbjct: 89 GIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDPITSVV----- 143
Query: 426 QFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASSDLINMGITV 605
+G + +A TL R I+G+ T+ EI DR+ S + GI V
Sbjct: 144 -GVGNATDSTKLLAQTTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKV 198
Query: 606 VSYTLKDIR 632
L+D+R
Sbjct: 199 ERVELRDVR 207
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 33.9 bits (74), Expect = 0.098
Identities = 31/129 (24%), Positives = 52/129 (40%)
Frame = +3
Query: 246 GRAFVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNSEMLLSACE 425
G F+ P I + I L + V S + + V +SV + K+ + ++
Sbjct: 89 GIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAVVYFKVFDPITSVV----- 143
Query: 426 QFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKVFEVASSDLINMGITV 605
+G + +A TL R I+G+ T+ EI DR+ S + GI V
Sbjct: 144 -GVGNATDSTKLLAQTTL----RTILGTHTLSEILSDREKISADMKISLDEATEPWGIKV 198
Query: 606 VSYTLKDIR 632
L+D+R
Sbjct: 199 ERVELRDVR 207
>Z81537-4|CAB04375.2| 669|Caenorhabditis elegans Hypothetical
protein F41D3.4 protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 320 VTNCLYQSGCAHFGYWNRSGQNSRSEFR 403
V++C Y+SG FG+ N +G N +++
Sbjct: 411 VSSCAYESGAGPFGWCNHTGLNPSGKYK 438
>Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical
protein C47A10.9 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = -2
Query: 613 YDTTVIPMLIRSLDATSNTFFENIFLSLYISSTVIDPIIARW*PSSVTRAM 461
+D P+L+ ++D T N + + ++++IS +I ++ RW ++ + M
Sbjct: 170 FDFPESPILVLAIDNTFNKYRQFALIAIFISEIMIFVLLIRWNTNNAMKDM 220
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 399 SEMLLSACEQFLGKTEQEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKIFSKKV 560
S L +ACE LG +QE +H + L+GH R+I +E I FS+ +
Sbjct: 225 SVKLQAACEAVLG--QQESRHEQIHELQGHARSI--QKMIETINSSLTAFSESL 274
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/60 (38%), Positives = 27/60 (45%)
Frame = +3
Query: 195 ALVISGCCYSKPLLVPGGRAFVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIA 374
A ISG S +VPG + V + QS S TM+ V PT T VP S T A
Sbjct: 265 ASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMS-TVSGPTGSTVTVVPGSSTSPA 323
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/60 (38%), Positives = 27/60 (45%)
Frame = +3
Query: 195 ALVISGCCYSKPLLVPGGRAFVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIA 374
A ISG S +VPG + V + QS S TM+ V PT T VP S T A
Sbjct: 472 ASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMS-TVSGPTGSTVTVVPGSSTSPA 530
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/60 (38%), Positives = 27/60 (45%)
Frame = +3
Query: 195 ALVISGCCYSKPLLVPGGRAFVWPAIQSVQRISLNTMTLQVESPTVYTSQGVPISVTGIA 374
A ISG S +VPG + V + QS S TM+ V PT T VP S T A
Sbjct: 472 ASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMS-TVSGPTGSTVTVVPGSSTSPA 530
>U61956-3|ABA03115.1| 402|Caenorhabditis elegans Hypothetical
protein R13H7.2c protein.
Length = 402
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 348 HPDWYRQLVTPLEGSWCL 295
HPDW + P+ GSW +
Sbjct: 311 HPDWVKVYAIPISGSWLI 328
>U61956-2|ABA03113.1| 440|Caenorhabditis elegans Hypothetical
protein R13H7.2a protein.
Length = 440
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 348 HPDWYRQLVTPLEGSWCL 295
HPDW + P+ GSW +
Sbjct: 349 HPDWVKVYAIPISGSWLI 366
>U61956-1|ABA03114.1| 408|Caenorhabditis elegans Hypothetical
protein R13H7.2b protein.
Length = 408
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 348 HPDWYRQLVTPLEGSWCL 295
HPDW + P+ GSW +
Sbjct: 317 HPDWVKVYAIPISGSWLI 334
>AF039710-3|AAD32272.1| 347|Caenorhabditis elegans Serpentine
receptor, class h protein100 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -2
Query: 595 PMLIRSLDATSNTFFENIFLSLYISSTV 512
P+LI + D+T++TF IF+ ++I+ +V
Sbjct: 197 PILILNSDSTTSTFIVIIFMPIFIAHSV 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,230
Number of Sequences: 27780
Number of extensions: 320781
Number of successful extensions: 881
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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