Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f22
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.47 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 441  TEQEIQHIALVTLEGHQRAIMGSMT 515
            T QE+  +  VTL GHQ+ IM S+T
Sbjct: 958  TVQELTALG-VTLVGHQKKIMNSVT 981


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 530 VYFLDRHRSHYSTLVTLQRHQGYV 459
           VY LD H  H++    +  H G++
Sbjct: 273 VYHLDNHHVHHANHHAILGHSGFL 296


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 310 RVMVFRDIRCTLWIA 266
           +V +F D+ C++W+A
Sbjct: 129 KVWIFGDLWCSIWLA 143


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 169 GSSHVALTKHS*FQDAAIPSHSWS 240
           G SH+  T H     AA P H  S
Sbjct: 422 GHSHIHATPHHHHSHAATPHHQHS 445


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 322 HQLSIPVRVCPFRLLES-LRSKFKVRIPRCC 411
           + LS  V    + ++ +  R  FK+ +P CC
Sbjct: 337 YYLSTTVNPLLYNIMSNKFREAFKLMLPNCC 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,472
Number of Sequences: 438
Number of extensions: 3997
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)