Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f21
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 127 8e-30
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 77 1e-14
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457... 50 1e-06
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 31 1.2
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 29 4.9
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 28 6.4
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 8.5
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 127 bits (307), Expect = 8e-30
Identities = 66/148 (44%), Positives = 86/148 (58%)
Frame = +2
Query: 230 MDGNDLSSEITRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQ 409
MDG S ++ T S+ +Q LDR TPHA RW+G+ V A + +R+ Q
Sbjct: 64 MDGAADSGTAGAAAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQ 123
Query: 410 GWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKF 589
G+YIVTY LGIY LNL I FL+P +DP +GPALPTR S+EF+PFIRRLPEFKF
Sbjct: 124 GFYIVTYGLGIYLLNLLIGFLSPMVDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKF 183
Query: 590 WLSVTKKHFNSFLLYFCGCFQYSSILAY 673
+ L + C F+Y+ A+
Sbjct: 184 CIHTI------LLTFICLAFRYAITKAF 205
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3
Query: 585 SFGCPLPKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 716
+F + K+ LIAF TF F++PVFWPIL+ Y++ LF +TMK
Sbjct: 196 AFRYAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMK 239
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +2
Query: 299 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 478
S+ +Q LDR TPH RW+ A V AA+ +R+ G+YIVTYALGIY LNL IAFL+P
Sbjct: 41 SRRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSP 100
Query: 479 KIDP 490
++DP
Sbjct: 101 QVDP 104
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 567 DGYQNSSFG-CPLPKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 716
DG + FG + K+ IAF TF F++PVFWPIL+ Y++ LF +TMK
Sbjct: 166 DGLKLIEFGRYSIVKAFCIAFVLTFFSVFDVPVFWPILLFYWVVLFTVTMK 216
>06_03_1339 +
29445324-29445395,29445487-29445598,29445673-29445756,
29446156-29446182,29446879-29446966,29447070-29447151,
29447414-29447434,29448412-29448605,29449419-29449560,
29449805-29449889,29450123-29450250,29450940-29451032,
29451095-29451327,29453384-29453564,29454122-29454169
Length = 529
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 600 LPKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 716
+ K+ +AF TF F++PVFWPIL+ Y++ LF +TMK
Sbjct: 457 ITKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMK 495
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 260 TRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVM 376
T+ G RI++ Y+S+ WTP A +G ALV+
Sbjct: 532 TQNPATQNGSVRINKWYESSARAWTPSAAASSIGQALVV 570
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 36 GANFQLLNFILINCFQINNLKYYAISKIYIVSLFNA 143
GAN++L++ + NC N ISKIY+++ FN+
Sbjct: 112 GANYRLIDIPVSNCLNSN------ISKIYVLTQFNS 141
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 36 GANFQLLNFILINCFQINNLKYYAISKIYIVSLFNA 143
GAN++L++ + NC N +SKIY+++ FN+
Sbjct: 95 GANYRLIDIPVSNCLNSN------VSKIYVLTQFNS 124
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 262 KKRNIVSRLDTNIAGLSEYIRQMDPSRKDTVGWK 363
KKR +L T++ G EY DP KD W+
Sbjct: 615 KKRRPRPKLSTSLFGQPEYPADADPEPKDARQWE 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,495
Number of Sequences: 37544
Number of extensions: 360301
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -