Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f21
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...   138   4e-33
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    31   0.82 
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    31   1.1  
Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score =  138 bits (334), Expect = 4e-33
 Identities = 61/115 (53%), Positives = 83/115 (72%)
 Frame = +2

Query: 263 RKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGI 442
           R G+ S+ +  +   YQ  LDR TPH   RWV + + +  F  RII  QG+YIV YA+GI
Sbjct: 8   RPGVTSRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGI 67

Query: 443 YHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTK 607
           Y+LNLF+ FLTP IDPA++ +D+++GP LP++ ++EFRPF+RRLPEFKFW S  K
Sbjct: 68  YYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMK 122



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +3

Query: 606 KSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMK 716
           K+TLIA  CTF + F++PVFWPILVMYF  L  +T+K
Sbjct: 122 KATLIAITCTFFEFFDVPVFWPILVMYFFILTFLTLK 158


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 295 NIAGLSEYIRQMDPSRKDTVGWKCLGHGCIYYPHNY*TRMVYCH-ICVGYLPFKLVHC 465
           N     EY+ ++  +R   + W  L    I+YP  +  +M+  H +C+G++ F +VHC
Sbjct: 80  NFCAQREYVPRLIFNRISILIWGSLW---IFYPLIHSDKMLLIHSVCLGFIIFIVVHC 134


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 365 ALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGP---ALPT 535
           A V AA   R++ K GW I +       L +  + L  ++D   D    E  P    +PT
Sbjct: 150 ASVHAAETPRLM-KDGWKIYSAEKEYERLGIPNSRLWKEVDINKDYKFSETYPRTFVIPT 208

Query: 536 RASEEFRPFIRRLPEFK 586
            + EE +PF+++L EF+
Sbjct: 209 VSWEEGKPFVKKLGEFR 225


>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 254 EITRKGILSQGWTRISQVYQSTLDRWTPH 340
           E T+   LSQ + R+ + YQ T+DR   H
Sbjct: 509 EETKFSTLSQNYDRLMEAYQKTIDRIEQH 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,210
Number of Sequences: 27780
Number of extensions: 354608
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)