Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f21
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.71 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 23  LSMIWCKLPT-PQFYSNKLFSNK*LEVLRYIKNIHS--KSV*CGEKFKITYNLFDICSNY 193
           + +++  +P    FYS +  +N+ LE LR++  + S   ++    KFK    +  I S Y
Sbjct: 787 VGVLFASMPNFADFYSEESINNQGLECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTY 846

Query: 194 L 196
           +
Sbjct: 847 M 847


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 488 PAMDLDDDENGPALPTRASEEFRP 559
           P    DDD  GPA P    E+  P
Sbjct: 479 PLPGADDDLFGPASPAYVHEDVSP 502


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 421 CHICVGYLPFKLVHCILNAEN*SCYGFR 504
           C I V Y PF    C+L   + +  GF+
Sbjct: 153 CEIDVEYFPFDEQTCVLKFGSWTYDGFK 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,527
Number of Sequences: 438
Number of extensions: 4626
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)