Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f20
         (674 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    26   1.3  
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    25   2.9  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   3.8  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   6.7  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   8.8  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   8.8  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 350 KTTCYRDRLPGHLDRRVAHQ*KRLDKANLLTPGSSRSDN---PGQHSEALK 493
           K TC+R R PGH+ R    +      +  +   S +++N    G   E+LK
Sbjct: 201 KITCHRCRKPGHMKRDCPMESNNTPTSTTMRDYSRKNENCSSSGGQRESLK 251


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 107 SKYASQ*EEHNRENRLEISESERKLWFKN 193
           +KY ++       N L ++E++ K+WF+N
Sbjct: 75  NKYLTRARRIEIANALHLNETQVKIWFQN 103


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 149 RLEISESERKLWFKN 193
           RL +SE + K+WF+N
Sbjct: 232 RLRLSEKQVKIWFQN 246


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 11  RSHDRERHVFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFK 190
           R+ D+ R V+    +L++ K   + R        Y +   +      L++SE + K+WF+
Sbjct: 213 RTKDKYRVVYTDQQRLELEKEFHYTR--------YITIRRKAELAQNLQLSERQVKIWFQ 264

Query: 191 N 193
           N
Sbjct: 265 N 265


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +2

Query: 14  SHDRERHVFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
           S ++     F   QL+  KN F   RY        ++         L ++E++ K+WF+N
Sbjct: 496 SEEKRPRTAFSNAQLQRLKNEFNENRY-------LTEKRRQTLSAELGLNEAQIKIWFQN 548


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +2

Query: 14  SHDRERHVFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
           S ++     F   QL+  KN F   RY        ++         L ++E++ K+WF+N
Sbjct: 496 SEEKRPRTAFSNAQLQRLKNEFNENRY-------LTEKRRQTLSAELGLNEAQIKIWFQN 548


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,797
Number of Sequences: 2352
Number of extensions: 15165
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)