Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f20
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52810-1|CAB57215.1| 67|Caenorhabditis elegans protein ( Caeno... 29 3.0
U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 29 3.0
X52811-1|CAB57217.1| 60|Caenorhabditis elegans protein ( Caeno... 28 5.3
U49944-3|AAM51525.1| 341|Caenorhabditis elegans Mesodermal line... 28 5.3
AC024847-9|AAR30201.1| 147|Caenorhabditis elegans C.elegans hom... 28 5.3
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 28 7.0
U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective phary... 28 7.0
AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein. 28 7.0
Z81085-1|CAB03112.3| 263|Caenorhabditis elegans Hypothetical pr... 27 9.2
>X52810-1|CAB57215.1| 67|Caenorhabditis elegans protein (
Caenorhabditis elegansceh-1 gene, unknown homeobox. ).
Length = 67
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 95 KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
K S+Y S E N +L++SE++ K+WF+N
Sbjct: 19 KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51
>U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox
protein 1 protein.
Length = 132
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 95 KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
K S+Y S E N +L++SE++ K+WF+N
Sbjct: 19 KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51
>X52811-1|CAB57217.1| 60|Caenorhabditis elegans protein (
Caenorhabditis elegansceh-9 gene, unknown homeobox. ).
Length = 60
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 110 KYASQ*EEHNRENRLEISESERKLWFKN 193
KY S + RL+++E++ K+WF+N
Sbjct: 24 KYLSSSDRSELAKRLDVTETQVKIWFQN 51
>U49944-3|AAM51525.1| 341|Caenorhabditis elegans Mesodermal lineage
specificationprotein 2 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 110 KYASQ*EEHNRENRLEISESERKLWFKN 193
+Y S E N +L ++E++ K+WF+N
Sbjct: 224 RYLSSQERSNLAQKLHLTETQVKIWFQN 251
>AC024847-9|AAR30201.1| 147|Caenorhabditis elegans C.elegans
homeobox protein 9 protein.
Length = 147
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 110 KYASQ*EEHNRENRLEISESERKLWFKN 193
KY S + RL+++E++ K+WF+N
Sbjct: 93 KYLSSSDRSELAKRLDVTETQVKIWFQN 120
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 590 LRGLLYNKKIKKGGCRFTLAGK*HQRFSKFCRPLKLHCVVPGCLISMIQVSK 435
+R + + K+ G L + + F ++C P L+ V PG LI + +SK
Sbjct: 86 MRRPMVRQLAKENGINDKLFMRSFKSFREYCTPEDLNSVDPGLLILLSDISK 137
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 590 LRGLLYNKKIKKGGCRFTLAGK*HQRFSKFCRPLKLHCVVPGCLISMIQVSK 435
+R + + K+ G L + + F ++C P L+ V PG LI + +SK
Sbjct: 88 MRRPMVRQLAKENGINDKLFMRSFKSFREYCTPEDLNSVDPGLLILLSDISK 139
>U56860-2|AAA98706.3| 225|Caenorhabditis elegans Defective pharynx
development protein2 protein.
Length = 225
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 53 QLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
Q++ T A +K KY S E L +SE + K WF+N
Sbjct: 139 QIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 185
>AY766389-1|AAV34757.1| 170|Caenorhabditis elegans PHA-2 protein.
Length = 170
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 53 QLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
Q++ T A +K KY S E L +SE + K WF+N
Sbjct: 84 QIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 130
>Z81085-1|CAB03112.3| 263|Caenorhabditis elegans Hypothetical
protein F46F3.1 protein.
Length = 263
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 23 RERHVFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 193
R+R V F Q+ + + F +++Y S + N + +S ++ K+WF+N
Sbjct: 99 RKRRVLFSPQQVHVLERKF-------QINRYLSAADRENLAKSINLSATQVKIWFQN 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,537
Number of Sequences: 27780
Number of extensions: 343823
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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