Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f17
(350 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 143 9e-34
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 135 2e-31
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 131 4e-30
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 117 5e-26
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 107 4e-23
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 88 3e-17
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 86 1e-16
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 82 3e-15
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 78 4e-14
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 59 2e-08
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 58 3e-08
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 58 4e-08
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 1e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 54 5e-07
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 50 1e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 48 4e-05
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 48 4e-05
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 45 4e-04
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 44 5e-04
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 44 7e-04
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.001
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 43 0.001
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 42 0.002
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 42 0.003
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 38 0.063
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 0.25
UniRef50_A6SJW6 Cluster: Translation initiation factor eIF3; n=2... 34 0.77
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 1.3
UniRef50_Q8PGW5 Cluster: Putative uncharacterized protein XAC349... 33 1.8
UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG... 33 1.8
UniRef50_Q581V5 Cluster: Putative uncharacterized protein; n=3; ... 33 1.8
UniRef50_UPI0000E47AE7 Cluster: PREDICTED: similar to Bicaudal D... 32 2.4
UniRef50_P70012 Cluster: Nuclear/mitotic apparatus protein; n=3;... 32 3.1
UniRef50_A5E4R2 Cluster: Putative uncharacterized protein; n=1; ... 32 3.1
UniRef50_A0UJJ3 Cluster: Putative uncharacterized protein; n=1; ... 31 5.4
UniRef50_Q1ZXF3 Cluster: Cytochrome P450 family protein; n=1; Di... 31 5.4
UniRef50_A5UZY7 Cluster: Phosphonoacetaldehyde hydrolase; n=2; R... 31 7.2
UniRef50_Q4QCI9 Cluster: Putative uncharacterized protein; n=3; ... 31 7.2
UniRef50_UPI0000F2B0BC Cluster: PREDICTED: similar to IL25; n=1;... 30 9.5
UniRef50_Q0VQH4 Cluster: Molybdopterin-guanine dinucleotide bios... 30 9.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 143 bits (346), Expect = 9e-34
Identities = 66/90 (73%), Positives = 75/90 (83%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
I P+GGF HYGEV NDFVM+KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SK
Sbjct: 314 INPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSK 373
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAAA 272
FGHGRFQT +K AFMG LKKDRI +E A
Sbjct: 374 FGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 135 bits (326), Expect = 2e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITP+GGFPHYGEVNNDFVM+KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SK
Sbjct: 314 ITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSK 373
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIRE 260
FGHGRFQT +K AFMG KK +E
Sbjct: 374 FGHGRFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 131 bits (316), Expect = 4e-30
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 263 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 322
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 323 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 351
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 117 bits (282), Expect = 5e-26
Identities = 54/87 (62%), Positives = 64/87 (73%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R EKI LKFIDTSSK
Sbjct: 363 ITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSK 422
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREE 263
GHGRFQT +K+ + G LKKDRIR E
Sbjct: 423 IGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 107 bits (258), Expect = 4e-23
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
I+P+GG H G+V NDFVM+K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SK
Sbjct: 259 ISPLGGCIHCGKVTNDFVMLKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSK 318
Query: 183 FGHGRFQTPADKAAFMGTLKKD 248
FGHG FQ +K FMG LKKD
Sbjct: 319 FGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 88.2 bits (209), Expect = 3e-17
Identities = 46/90 (51%), Positives = 58/90 (64%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
I +GGF HYGEV NDF+ +KGC + KK + T+ K L V T + AL+KI+ K DT+ K
Sbjct: 292 INLLGGFVHYGEVTNDFIRLKGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYK 350
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAAA 272
GHG FQT K AF+G LKK+ EE A
Sbjct: 351 VGHGCFQTTEGKRAFIGPLKKECTAEEEGA 380
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 86.2 bits (204), Expect = 1e-16
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +3
Query: 75 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 254
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 255 REEAAA 272
+E A
Sbjct: 148 AKEEGA 153
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 81.8 bits (193), Expect = 3e-15
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 149
I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 19 INPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 78.2 bits (184), Expect = 4e-14
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 12 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 191
MGGF +G +NND+++IKG G KR I LRK+++ EKI LK++DTSSK GH
Sbjct: 293 MGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGH 352
Query: 192 GRFQTPADKAAFM 230
GR+++ ADK + M
Sbjct: 353 GRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 58.8 bits (136), Expect = 2e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++ + ++ SK
Sbjct: 305 ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 58.4 bits (135), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
+TP GGF HYGEV N +++++G GP KR++ R +R HT + ++L ++ TSSK
Sbjct: 299 VTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVSTSSK 355
Query: 183 FG 188
G
Sbjct: 356 QG 357
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 58.0 bits (134), Expect = 4e-08
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I T+SK
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYISTTSK 332
Query: 183 FG 188
G
Sbjct: 333 QG 334
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 56.8 bits (131), Expect = 1e-07
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T SK
Sbjct: 278 ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLSTQSK 335
Query: 183 FG 188
G
Sbjct: 336 MG 337
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITP GGF HYGEV N +++I+G GP KR+I R + R R +++ ++ T+SK
Sbjct: 279 ITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVSTASK 335
Query: 183 FG 188
G
Sbjct: 336 QG 337
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 49.6 bits (113), Expect = 1e-05
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 119
+TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 281 VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
I GGF HYG V ND+V++ G GP KR+I +R R K ++ + L +I SK
Sbjct: 271 INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR--QKVPDIDNVKLDYISLESK 328
Query: 183 FG 188
G
Sbjct: 329 QG 330
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 48.0 bits (109), Expect = 4e-05
Identities = 21/61 (34%), Positives = 40/61 (65%)
Frame = +3
Query: 6 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 185
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++ T+S
Sbjct: 277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQ 334
Query: 186 G 188
G
Sbjct: 335 G 335
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 44.8 bits (101), Expect = 4e-04
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 119
I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 274 INPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 44.4 bits (100), Expect = 5e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 152
I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 274 INPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 44.0 bits (99), Expect = 7e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 119
I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 277 INPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 119
+TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 119
I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 292 INPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 42.3 bits (95), Expect = 0.002
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +3
Query: 15 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +++I S K
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 41.9 bits (94), Expect = 0.003
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDTS 176
+TP GGF YG V + FVM+ G G KR I +R ++R + + K + +I +
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339
Query: 177 SKFG 188
SK G
Sbjct: 340 SKQG 343
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 37.5 bits (83), Expect = 0.063
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 15 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 119
GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 0.25
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 115 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 237
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_A6SJW6 Cluster: Translation initiation factor eIF3; n=2;
Sclerotiniaceae|Rep: Translation initiation factor eIF3
- Botryotinia fuckeliana B05.10
Length = 600
Score = 33.9 bits (74), Expect = 0.77
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -1
Query: 341 CIVKCLFSRTTLKAAQQPRWGCGSRSFFANTILLECTHECSLVSRRLESTMTELGRG 171
C + +FS T + Q +G G+ S FA L E S+VS +ST T GRG
Sbjct: 81 CYLFAIFSTCTGRKLDQQVYGAGTSSLFA-VQLAEDESTFSVVSNTRDSTKTRFGRG 136
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 1.3
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +3
Query: 36 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 161
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
>UniRef50_Q8PGW5 Cluster: Putative uncharacterized protein XAC3497;
n=1; Xanthomonas axonopodis pv. citri|Rep: Putative
uncharacterized protein XAC3497 - Xanthomonas axonopodis
pv. citri
Length = 127
Score = 32.7 bits (71), Expect = 1.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 196 DSRRRLTRLHSWVHSRRIVFAKKLR-LPQPQRGCCAALSVVRENKHLTMQ 342
D +RL RLH+WVH + A + LP CC+ + R ++ +MQ
Sbjct: 4 DLTQRLGRLHAWVHGYLAIGANPINLLPAFDGTCCSEIRPRRPDRTRSMQ 53
>UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG31;
n=2; Pseudomonadaceae|Rep: Putative uncharacterized
protein ORF SG31 - Pseudomonas aeruginosa
Length = 161
Score = 32.7 bits (71), Expect = 1.8
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 93 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAA 224
I R + + KR+AL+K+ K I+ + GHGR P+D+AA
Sbjct: 52 IAARRSTYKQLNKRSALDKVKRK-IEKAKGTGHGRTAVPSDQAA 94
>UniRef50_Q581V5 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 334
Score = 32.7 bits (71), Expect = 1.8
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 127 QRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL-PQPQRGCC 297
QR + RST + PR +S+ V + LTR WV + F LRL P RGCC
Sbjct: 11 QRYICANRSTYRDIWPRLASMRVPAAYSLTR---WVARKGGAFHCALRLHPHRNRGCC 65
>UniRef50_UPI0000E47AE7 Cluster: PREDICTED: similar to Bicaudal D
homolog 1 (Drosophila); n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Bicaudal D homolog
1 (Drosophila) - Strongylocentrotus purpuratus
Length = 762
Score = 32.3 bits (70), Expect = 2.4
Identities = 26/91 (28%), Positives = 44/91 (48%)
Frame = +3
Query: 36 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 215
++ ++ V +KG M +++++TLR L+ + A + NLK SK+ H +
Sbjct: 612 DLRDEVVQLKGLLMTKREQVVTLRTVLKANKTTAEVALANLK-----SKYEH-------E 659
Query: 216 KAAFMGTLKKDRIREEAAATTTPAGLLRSLK 308
KA T+KK +R E A A SL+
Sbjct: 660 KAIIAETMKK--LRNELKALKEEAASFASLR 688
>UniRef50_P70012 Cluster: Nuclear/mitotic apparatus protein; n=3;
Xenopus|Rep: Nuclear/mitotic apparatus protein - Xenopus
laevis (African clawed frog)
Length = 2253
Score = 31.9 bits (69), Expect = 3.1
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 242 LECTHECSL-VSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAAT 66
LE H+ SL V +L+S EL V + + + C Q L ND+ +SHAAT
Sbjct: 611 LEQDHQTSLSVIEKLKSEKEELASKVQDLDAKMLGLIAKC---QNLDSENDSQSKSHAAT 667
Query: 65 LDHHK 51
++ K
Sbjct: 668 VESLK 672
>UniRef50_A5E4R2 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 906
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 75 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS--SKFGHGRFQTPADKAAFMGTLKKD 248
+G ++T RKS V+ R A +++++K + + G++ +DK + ++++
Sbjct: 774 VGGASGLMTKRKSEYVNFSRVA-KRVDIKLLKDNLWKAINEGKYNDASDKESKHEEMQEE 832
Query: 249 RIREEAAATTTPAGLLRSLK 308
+ + T P LRS+K
Sbjct: 833 NVNQNIVLTPEPESALRSIK 852
>UniRef50_A0UJJ3 Cluster: Putative uncharacterized protein; n=1;
Burkholderia multivorans ATCC 17616|Rep: Putative
uncharacterized protein - Burkholderia multivorans ATCC
17616
Length = 603
Score = 31.1 bits (67), Expect = 5.4
Identities = 23/87 (26%), Positives = 34/87 (39%)
Frame = +3
Query: 54 VMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 233
V I C+ P+ + V T RAA + S + R + + A G
Sbjct: 489 VRIGPACVRPELPTACALRRACVATSRAAARANSAACSAPSPRETRARPHSSCGRGATAG 548
Query: 234 TLKKDRIREEAAATTTPAGLLRSLKCS 314
T ++ R AAA T AG R +C+
Sbjct: 549 TRRRRRALRRAAAATAAAGRCRRARCA 575
>UniRef50_Q1ZXF3 Cluster: Cytochrome P450 family protein; n=1;
Dictyostelium discoideum AX4|Rep: Cytochrome P450 family
protein - Dictyostelium discoideum AX4
Length = 510
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 84 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 191
K+ T KSL++H K+ +EK +++F+++ KF +
Sbjct: 128 KRAKTTFLKSLKIHGKKYLIEKKSIEFVNSIEKFSN 163
>UniRef50_A5UZY7 Cluster: Phosphonoacetaldehyde hydrolase; n=2;
Roseiflexus|Rep: Phosphonoacetaldehyde hydrolase -
Roseiflexus sp. RS-1
Length = 277
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 186 GHGRFQTPADKAAFMGTLKKDRIREEAAATT 278
GHG TP D A MG +KKD +R A T
Sbjct: 41 GHGVVITPEDARAGMGLMKKDHLRTILARPT 71
>UniRef50_Q4QCI9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 596
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 308 LKAAQQPRWGCGSRSFFANTILLECT-HECSLVSRRLESTMTELG 177
L +A +PRWG R+ N +L C+ H +++ R + TM G
Sbjct: 429 LVSAYEPRWGVAPRTNTYNALLTGCSRHRSTMLHRVVYKTMKNSG 473
>UniRef50_UPI0000F2B0BC Cluster: PREDICTED: similar to IL25; n=1;
Monodelphis domestica|Rep: PREDICTED: similar to IL25 -
Monodelphis domestica
Length = 187
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -1
Query: 239 ECTHECSLVSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLD 60
+ + + L SR + L R N DL+ LC H L +D +R ++ L
Sbjct: 83 QASRDGPLNSRAISPWKYVLDRDENRLPQDLYHARCLCPHCINLRSGHDIDYRGNSELLW 142
Query: 59 HHKVVVY 39
H++ V Y
Sbjct: 143 HNQTVFY 149
>UniRef50_Q0VQH4 Cluster: Molybdopterin-guanine dinucleotide
biosynthesisprotein A; n=1; Alcanivorax borkumensis
SK2|Rep: Molybdopterin-guanine dinucleotide
biosynthesisprotein A - Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573)
Length = 184
Score = 30.3 bits (65), Expect = 9.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 160 NSLTPRPSSVMVDSRRRLTRLHSW 231
++L PRPS +++ + R + R H+W
Sbjct: 38 DNLLPRPSRIVISANRNIDRYHAW 61
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,657,563
Number of Sequences: 1657284
Number of extensions: 6990893
Number of successful extensions: 15654
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 15403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15653
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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