Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f17
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   124   4e-30
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   124   4e-30
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   0.85 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   1.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   2.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   3.4  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   3.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   4.5  
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   6.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   6.0  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    24   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  124 bits (299), Expect = 4e-30
 Identities = 56/82 (68%), Positives = 65/82 (79%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SK
Sbjct: 305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASK 364

Query: 183 FGHGRFQTPADKAAFMGTLKKD 248
           FGHGRFQTPA+   F+GTLKKD
Sbjct: 365 FGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  124 bits (299), Expect = 4e-30
 Identities = 56/82 (68%), Positives = 65/82 (79%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SK
Sbjct: 305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASK 364

Query: 183 FGHGRFQTPADKAAFMGTLKKD 248
           FGHGRFQTPA+   F+GTLKKD
Sbjct: 365 FGHGRFQTPAEAKQFLGTLKKD 386


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 160 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 273
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 227 HGYTQEGSYSRRSCGYHNPS 286
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 184 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKK 348
           SV+ +SR+R   +HS   +RR+   ++  L   Q+   AA    RE +HLT+ +K
Sbjct: 2   SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEK 54


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -1

Query: 233 THECSLVSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLDHH 54
           THE +L S++  +   E+G   ++ E+  F   P C         +D LF+ H     H 
Sbjct: 212 THEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFK-HCRE-KHE 269

Query: 53  KVVVYFTIMGETSHR 9
           +  +   + G  +H+
Sbjct: 270 RCYICDQVAGRPTHQ 284


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 250 VFAKKLRLPQPQRG 291
           VFA+KLRLPQ Q G
Sbjct: 311 VFAQKLRLPQLQTG 324


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 290 PRWGCGSRSFFANTILLECTHECSLVSRRLESTM 189
           PRW   SR    NT   + +   SLV  +L+ST+
Sbjct: 618 PRWESSSRDDKTNTSSTQPSQVDSLVPTQLDSTI 651


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 116

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 88 FLGPMQQPLIITKSLFTSP 32
          FL   Q+PLIITK  +++P
Sbjct: 13 FLKNPQKPLIITKRFYSTP 31


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 227  HGYTQEGSYSRRSCGYHNPSGAAAQP 304
            +GY Q G       GY  P+G  A P
Sbjct: 1338 YGYNQTGMEGYSEYGYAQPAGNMANP 1363


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 226 SWVHSRRIVFAKKLRL 273
           SWV+SR  +F+K LR+
Sbjct: 293 SWVYSRHYLFSKILRV 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,001
Number of Sequences: 5004
Number of extensions: 28191
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)