Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f17
         (350 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   175   2e-44
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   175   2e-44
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   175   2e-44
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   175   2e-44
BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   168   2e-42
BT025914-1|ABG02158.1|  196|Drosophila melanogaster IP08472p pro...    28   3.8  
BT016040-1|AAV36925.1|  671|Drosophila melanogaster LP22276p pro...    28   3.8  
AY122202-1|AAM52714.1|  585|Drosophila melanogaster LD47517p pro...    28   3.8  
AY118842-1|AAM50702.1|  435|Drosophila melanogaster GM13065p pro...    28   3.8  
AE014297-323|AAN13256.1|  639|Drosophila melanogaster CG2182-PB,...    28   3.8  
AE014297-322|AAF51975.3|  671|Drosophila melanogaster CG2182-PA,...    28   3.8  
AE014298-1060|AAN09214.1|  177|Drosophila melanogaster CG32718-P...    27   5.1  
BT025191-1|ABF17882.1|  931|Drosophila melanogaster FI01302p pro...    27   6.7  
BT001257-1|AAN71013.1|  930|Drosophila melanogaster AT01735p pro...    27   6.7  
AY119571-1|AAM50225.1|  512|Drosophila melanogaster LD02329p pro...    27   6.7  
AE014297-2007|AAF55168.1|  931|Drosophila melanogaster CG4913-PA...    27   6.7  

>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  175 bits (425), Expect = 2e-44
 Identities = 81/95 (85%), Positives = 86/95 (90%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK
Sbjct: 314 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 373

Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 287
            GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 374 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 408


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  175 bits (425), Expect = 2e-44
 Identities = 81/95 (85%), Positives = 86/95 (90%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK
Sbjct: 301 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 360

Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 287
            GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 361 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 395


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  175 bits (425), Expect = 2e-44
 Identities = 81/95 (85%), Positives = 86/95 (90%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK
Sbjct: 301 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 360

Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 287
            GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 361 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 395


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  175 bits (425), Expect = 2e-44
 Identities = 81/95 (85%), Positives = 86/95 (90%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK
Sbjct: 314 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 373

Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPA 287
            GHGRFQTPADK AFMG LKKDR++EEAAATT  A
Sbjct: 374 MGHGRFQTPADKLAFMGPLKKDRLKEEAAATTAAA 408


>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  168 bits (408), Expect = 2e-42
 Identities = 77/89 (86%), Positives = 82/89 (92%)
 Frame = +3

Query: 3   ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
           ITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK
Sbjct: 325 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSK 384

Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
            GHGRFQTPADK AFMG LKKDR++EEAA
Sbjct: 385 MGHGRFQTPADKLAFMGPLKKDRLKEEAA 413


>BT025914-1|ABG02158.1|  196|Drosophila melanogaster IP08472p
           protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 140 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 57
           CS  LC H      S+D LF SH + LDH
Sbjct: 88  CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 116


>BT016040-1|AAV36925.1|  671|Drosophila melanogaster LP22276p
           protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 140 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 57
           CS  LC H      S+D LF SH + LDH
Sbjct: 563 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 591


>AY122202-1|AAM52714.1|  585|Drosophila melanogaster LD47517p
           protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 140 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 57
           CS  LC H      S+D LF SH + LDH
Sbjct: 477 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 505


>AY118842-1|AAM50702.1|  435|Drosophila melanogaster GM13065p
           protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 174 SSKFGHGRFQTPADKAA----FMGTLKKDRIREEAAATTTPAGLLRSLKC 311
           + KFG  + Q P+DK A    F+G+LK     E+     +  G +  ++C
Sbjct: 242 AEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRC 291


>AE014297-323|AAN13256.1|  639|Drosophila melanogaster CG2182-PB,
           isoform B protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 140 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 57
           CS  LC H      S+D LF SH + LDH
Sbjct: 531 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 559


>AE014297-322|AAF51975.3|  671|Drosophila melanogaster CG2182-PA,
           isoform A protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 140 CSP-LCMHTQRLSKSNDTLFRSHAATLDH 57
           CS  LC H      S+D LF SH + LDH
Sbjct: 563 CSDGLCNHDVHDEDSDDLLFYSHQSQLDH 591


>AE014298-1060|AAN09214.1|  177|Drosophila melanogaster CG32718-PA
          protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 79 PMQQPLIITKSLFTSP*WGKPPIGV 5
          P+  PL I   LF +  WGKP +GV
Sbjct: 9  PIWTPLFILFLLFLAGVWGKPSLGV 33


>BT025191-1|ABF17882.1|  931|Drosophila melanogaster FI01302p
           protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 296
           SSK G G+ +   +K+    +  K+R RE+ +  TT A  L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324


>BT001257-1|AAN71013.1|  930|Drosophila melanogaster AT01735p
           protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 296
           SSK G G+ +   +K+    +  K+R RE+ +  TT A  L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324


>AY119571-1|AAM50225.1|  512|Drosophila melanogaster LD02329p
           protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 296
           SSK G G+ +   +K+    +  K+R RE+ +  TT A  L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324


>AE014297-2007|AAF55168.1|  931|Drosophila melanogaster CG4913-PA
           protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 SSKFGHGRFQTPADKAAFMGTLKKDRIREEAAATTTPAGLL 296
           SSK G G+ +   +K+    +  K+R RE+ +  TT A  L
Sbjct: 284 SSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANAL 324


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,233
Number of Sequences: 53049
Number of extensions: 343612
Number of successful extensions: 1105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)