Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f17
(350 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 131 2e-31
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 131 2e-31
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 131 2e-31
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 131 2e-31
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 131 2e-31
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 131 2e-31
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 131 2e-31
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 131 2e-31
AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical ... 28 2.2
U41543-8|AAB37025.2| 393|Caenorhabditis elegans Hypothetical pr... 27 2.9
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 2.9
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 213 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 272
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 273 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 301
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 263 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 322
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 323 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 351
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 213 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 272
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 273 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 301
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 263 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 322
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 323 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 351
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 131 bits (316), Expect = 2e-31
Identities = 61/89 (68%), Positives = 71/89 (79%)
Frame = +3
Query: 3 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 182
ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK
Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSK 370
Query: 183 FGHGRFQTPADKAAFMGTLKKDRIREEAA 269
GHGRFQT A+K AFMG LK+D + E A
Sbjct: 371 TGHGRFQTTAEKRAFMGKLKRDFLAEAEA 399
>AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical
protein R02D3.7 protein.
Length = 479
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +1
Query: 205 RRLTRLHSWVHS--RRIVFA----KKLRLPQPQRGCCAALSVVRENKHLTMQKK 348
R +T++H+W + ++ A KK R CC + R KHL KK
Sbjct: 32 RHMTQIHNWTTEDCQELIAAIKSEKKSRASSTSFVCCHCRMIFRSVKHLVQHKK 85
>U41543-8|AAB37025.2| 393|Caenorhabditis elegans Hypothetical
protein F46H5.8 protein.
Length = 393
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 157 SNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 273
SN L P PS++ + + L HS V +++I+ RL
Sbjct: 266 SNRLLPMPSNMGISNAEGLAHFHSLVANKQILSENMYRL 304
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 157 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 240
+NSLT PSS +V+ R LT L+ ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,626,646
Number of Sequences: 27780
Number of extensions: 168522
Number of successful extensions: 421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -