Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f13
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 507 RVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVSQRERVRLQ 668
           ++H+  G + +    + Q  Q H+  F+Q ++Q+ A + +  +     E+V+ Q
Sbjct: 301 KLHTYRGNYTLFKKQYAQDMQVHEKNFDQQQKQLKAMKKEGKSAKQAEEQVKQQ 354


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 92  YYHYVLNEKNRARIMSLKENVAFLAPLSASANIFNYMAELATRAGKQP 235
           + H  L  KNRA+ M  + +   + P+S++    NY +E  TR  + P
Sbjct: 266 HLHCWLMHKNRAKFMIFQNSAEIVLPISSTLENPNYASEF-TRIFETP 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,637
Number of Sequences: 27780
Number of extensions: 281969
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)