Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f10
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 30 0.27
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 30 0.27
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 30 0.27
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 30 0.27
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 30 0.27
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 30 0.27
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 30 0.27
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 30 0.27
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 30 0.27
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 30 0.27
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 30 0.27
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 0.48
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 27 1.9
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.9
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 3.4
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.5
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 4.5
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.9
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 7.8
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 7.8
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 25 7.8
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.8
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 30.3 bits (65), Expect = 0.27
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 271 NALQAVVAQKTEELFKKQE-----FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGF 429
+AL +V +TE + K E F+ +I D Q+ + T+++ LN
Sbjct: 827 DALSRIV-DETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRV 885
Query: 430 QETMQRKDEMM-HKKDELLQVKDTQVSNLIAK 522
+E +Q KD ++ + KD++L DTQ++ I K
Sbjct: 886 EENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 352 KDKQIEAKDLQ-VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAK 522
++ Q ++D Q +T+ TD+ Q+ + DE KK ELL+ K+ + K
Sbjct: 274 RNHQFHSRDSQPITQRHTDIESRLQKMQDNAKELDESRRKKIELLEKKERDEEQFLEK 331
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = -1
Query: 524 ILAIKLETCVSLTCNNSSFL-CIISSFLCIVS*NPVYMRLRSVITRVTCKSLASICLSLI 348
I I+LE V+ C N + + C S+ CIV R + I+R TC + + +++
Sbjct: 93 IKTIELEATVNCLCVNENLVVCGCSNSSCIVYSWNAEQRNLTEISRFTCSEIIPLEFAIV 152
Query: 347 AMMRSINSCFLKSSS---VFCATTACSAF 270
+ I SS V+ + +A S+F
Sbjct: 153 KLDHGIILTVCGSSKKIMVYGSDSAISSF 181
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 202 IKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKDL 381
++Q +++N+QL L +E N + Q T E+ ++ +ER K + A+ +
Sbjct: 427 LEQLQQENQQLRMLLADADSEMMNLEYEIRQQMTREMEERVSEVERTFLTKLLEESAQGI 486
Query: 382 QVT-RVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQ 552
+ T + + + Q+ K E + + +++++ ++ +L + I S Q
Sbjct: 487 EYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRSLEEESIKESSATQQ 544
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 73 LITKSGVIQLIMKSKLPYAIELQEWLL 153
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 201 CGVVLARA*HLRNYFF*KPFL*FYGVRKLAL 109
CG++L A L YFF L +G+RK+AL
Sbjct: 86 CGLILTLA--LEVYFFSTALLKLFGLRKIAL 114
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 686 TMLAASMLRLCFWLSTYVFWPVIAVNVV 603
TM+ LR +WLST +F P++ V+
Sbjct: 706 TMMGLMSLRKAYWLSTVIF-PLLCFTVI 732
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -1
Query: 653 FWLSTYVFWPVIAVNVVPSRVTHSTGCLRLSAGY*TARSDKSIILAIKLETCVSLTCNNS 474
FW TY+F ++ + + + C + Y S L+ + +C+ + CN+S
Sbjct: 226 FWERTYMFLELLPLQSI------TAACESILKDYLLNLVKTSESLSSQQMSCLRICCNSS 279
Query: 473 SFLCIISSF 447
SF SF
Sbjct: 280 SFWSAADSF 288
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 611 NVVPSRVTHSTGCLRLSAGY*TARSDKSIILAI 513
+V+P HS C R S+ Y A +KSI + I
Sbjct: 222 SVIPDSSFHSVACYRASSHYKEAPVEKSIDIDI 254
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 323 CFLKSSSVF-CATTACSAFVCSVNVAISLVTNC 228
CF + S +F C+T + AF+ + V S VTNC
Sbjct: 563 CFSEMSPLFACSTYSALAFIL-LQVISSYVTNC 594
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 154 EEVIPQVLCTGKYDPAIKQQEEKNKQL 234
+ V+ +++ GKY IK+Q +NKQL
Sbjct: 551 KRVLQRLIIEGKYTYYIKRQGTQNKQL 577
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 184 GKYDPAIKQQEEKNKQLVTKLIATF 258
G+++ IKQQEE K L +K + F
Sbjct: 442 GEFENLIKQQEEAKKSLWSKRFSRF 466
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 591 HAQHRMFALVRGVLNRAIRQIYH 523
HA +R +A R L +AI+ IYH
Sbjct: 49 HASYRGYAYSRHGLYKAIKHIYH 71
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.8
Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Frame = +1
Query: 202 IKQQEEKNKQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEA--- 372
I ++ E + L+ + T H N ++A+ K E + IER+ I + ++
Sbjct: 75 IIEEIEIPRTLIDQYECLVTYH-NGIRAIYNTKKNEAKNMYKEIERLSVILGESVDEVNF 133
Query: 373 --------KDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMI 528
D+++ ++ LN ++ ++ RK++ + K+EL +++D+ L
Sbjct: 134 VNGDFEDISDIKLEQLSAKLNELHQIYR---LRKEKNIEIKEELKKLQDSLSIKLSMPAD 190
Query: 529 DLSDRAVQY 555
DLS +++
Sbjct: 191 DLSKNGIKH 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,656
Number of Sequences: 5004
Number of extensions: 52388
Number of successful extensions: 221
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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