Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f10
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.68 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.8  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   6.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 ELLQVKDTQVSNLIAKMIDLSD 540
           +L  +K    SNL+AK IDLSD
Sbjct: 187 DLKHMKQEAGSNLVAKGIDLSD 208


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -3

Query: 660 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQI 529
           F+L AF +  +   + KR   A+H ++ ++A +  +++   ++I
Sbjct: 312 FILSAFDMARIIQITPKRIQYAQHKENELYANLMKIVHEKQQEI 355


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -3

Query: 660 FVLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQI 529
           F+L AF +  +   + KR   A+H ++ ++A +  +++   ++I
Sbjct: 350 FILSAFDMARIIQITPKRIQYAQHKENELYANLMKIVHEKQQEI 393


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 294 RHHRLQRVCVLGKCRNQFSHQLFVLFLLLFN 202
           +H  L R  V      +  HQ  VLF LL++
Sbjct: 85  KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 294 RHHRLQRVCVLGKCRNQFSHQLFVLFLLLFN 202
           +H  L R  V      +  HQ  VLF LL++
Sbjct: 85  KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 373 KDLQVTRVMTDLNRMYTGFQETMQRK 450
           KDL    V++    MY G  + MQ++
Sbjct: 66  KDLYANTVLSGGTTMYPGIADRMQKE 91


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = +1

Query: 226 KQLVTKLIATFTEHTNALQAVVAQKTEELFKKQEFIERIIAIKDKQIEAKD 378
           KQ+    I  F+ H N L  +      +  +   F+   + ++D + + KD
Sbjct: 145 KQICRPKIHVFSLHDNKLITMYRFPQNQFKESSLFVTIAVDVRDTEDKCKD 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,055
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)