Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13f09
(235 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 0.33
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 0.58
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 0.58
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 1.8
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 25 1.8
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 24 2.3
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 24 3.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 23 4.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 23 4.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 23 5.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 23 5.4
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 23 5.4
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 22 9.4
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 22 9.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 22 9.4
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 22 9.4
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 22 9.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 22 9.4
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.1 bits (57), Expect = 0.33
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 29 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
S FG+ +C+ + FT S K W N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 0.58
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 65 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
Q + A + ++L + P WEND LLK H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 0.58
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 18 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 116
WSTS ++LL I + P SK L +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 36 SAATLLTIANSLSRPFSKFLRSAVKSLWPC 125
SA TLL IA+ L + ++ +K LW C
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDC 567
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 107 KIVVAVPVNWENDNLSVLLKHLHNLNLIGIEIVN*NKSCGKK 232
K +V + ++ L+V+LK HN+++IG+E + K GK+
Sbjct: 302 KNIVIIGSSFIGLELAVVLKD-HNVSVIGMESIPFEKVMGKE 342
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +2
Query: 41 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 172
SN+++ CE I+++++ ++ + + VP + N+ KHL
Sbjct: 70 SNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHL 113
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 234 FFFPHDLF*FTISIPMRFRLCKC 166
FF P +F F +S+P F L +C
Sbjct: 312 FFIPQ-IFNFALSVPQLFGLVEC 333
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +2
Query: 41 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLNLIGIEIVN 208
SN + +C + + ++ +S ++ + +D LSV+ H+H L L + N
Sbjct: 395 SNFLLHCLPWTPFLVQVVAISGFGGASLMIALISDFLSVMTIHIHLLYLASSRLYN 450
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 67 VYHGHFRNFYAQQ*NRC 117
+ HG +++FY NRC
Sbjct: 516 ILHGGYKSFYENHKNRC 532
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 41 SNVINYCEQFITAIFEIFTLSSKIVVAVPVNW-ENDNLSVLLKHLHNL 181
S V ++C F +F+I L+ I +NW +N S +L ++ ++
Sbjct: 449 SAVHSFCGNFRRFMFDIVRLTVSITPIESLNWIQNRFQSTVLGNMEDI 496
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 44 NVINYCEQFITAIFEIFTLSSKIVVAVPVN-WEN 142
N+IN FIT + + ++V+ +P N W++
Sbjct: 116 NIINIIVVFITTLLTCLAFAIELVLFLPHNTWQS 149
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 115 NDFTAERKNFENGRDKL 65
N+ T RKNF N RD L
Sbjct: 787 NNLTEARKNFSNYRDCL 803
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 198 SIPMRFRLCKCFKSTLKLSFSQLTGTA 118
+IP++F +C K F +TG A
Sbjct: 245 AIPLKFLSARCLKFVRPSLFGYITGHA 271
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 122 VPVNWENDNLSVLLKHLHNLN 184
V V W N ++LK+ N+N
Sbjct: 424 VSVAWANSTNQIILKNQENIN 444
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 131 NWENDNLSVLLKHLHNLNLIGIEI 202
+W+ +LS++LK + L +G+E+
Sbjct: 1821 HWDFIDLSLVLKRFYLLRDVGLEL 1844
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 70 YHGHFRNFYAQQ*NRC 117
Y G+F FYA + RC
Sbjct: 432 YKGNFSQFYATREERC 447
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 102 AVKSLWPCPSIGKT 143
A++SLWP PS+ ++
Sbjct: 23 ALRSLWPPPSLNES 36
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 133 IDGHGHNDFTAERKNFENGRDKLFAIVNNV 44
ID GH DF++E + D F +V+ V
Sbjct: 99 IDSPGHVDFSSEVSSASRLCDGAFVLVDAV 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,001,810
Number of Sequences: 5004
Number of extensions: 16850
Number of successful extensions: 54
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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