Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f05
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schiz...    34   0.004
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   0.59 
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   3.1  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   5.5  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   5.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   7.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   9.6  

>SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 32

 Score = 34.3 bits (75), Expect = 0.004
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 102 ITDIQLAVFSNILGVSIFLLVILYHYIN 185
           +TD+QL       G+S+ LL+ILYHY++
Sbjct: 1   MTDVQLQNIVTTFGISMMLLIILYHYLS 28


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 124 TASWMSVIIFRLDVLN*IKLNYFVLRFFWIRV 29
           TA W+++++F + VLN   + +F    FW  +
Sbjct: 156 TAGWIAILLFLVAVLNSFFVKWFGETEFWFAI 187


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 240 TPMLLQWPRLTYIIWNY 190
           T  LL W   TY +WNY
Sbjct: 52  TTELLDWNPETYSVWNY 68


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 162 VILYHYINANSSK*YRSIAAIVKALVSLI 248
           V+LY Y+     +   SI   +KA+VS++
Sbjct: 860 VVLYEYLGEEYPEVLGSILGAIKAIVSVV 888


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 292 SSKTFIYILI*STFFIRDTNAFTMAAIDL 206
           +S +F ++   STFFIR  +  T+A I++
Sbjct: 137 ASSSFHFVTSPSTFFIRYDDNITVAGINV 165


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 105 TDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKAL 236
           TD  L +++ + G S +  V ++H+ N +S    +      KAL
Sbjct: 515 TDATLRIWALLPGSSAWKCVAIHHFANTHSQASIKQRYGFSKAL 558


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 255 HFLLETPMLLQWPRLTYIIWNYSH 184
           HFL     L+ +P L ++ W Y H
Sbjct: 282 HFLARFFCLIFFPFLFFLFWFYMH 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,600
Number of Sequences: 5004
Number of extensions: 22723
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)