Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13f05
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   1.6  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 99  MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 242
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,342
Number of Sequences: 37544
Number of extensions: 125428
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)