Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e24
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0508 + 4424607-4424800,4425067-4425111,4425587-4425677,442...    31   0.88 
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     27   8.2  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    27   8.2  

>08_01_0508 +
           4424607-4424800,4425067-4425111,4425587-4425677,
           4425791-4425850,4427031-4427150,4427332-4427583
          Length = 253

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 305 PETHATVIWRNIKRFRSAVNPSNALLLPIELADQFLD---RLAPPSAPLN 165
           PE+HA V+   I+ +R A++    L LP     ++L    ++   S PLN
Sbjct: 94  PESHAAVVKTAIRNYRKAIDEGLLLKLPFTTIFEYLQAKHKIESASGPLN 143


>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -1

Query: 173 PLNDPILSYKQYNSDAPSSLNLTFTLVELKGVLNHVKD---SAPGEDGI 36
           P+ DPI       S+ P+S+  T   V L+    H  D   S  GED +
Sbjct: 534 PIADPIYDISPSRSEKPASIGSTIDAVLLQEGNTHTSDVEMSMDGEDSV 582


>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 564  LGDFNSHHTSWGSSVSNSYGYELLDILDMYS--LCILNSGSPTRLTKPGEVISAIDLSIC 391
            LG+F+      GSS+S     + ++I+   +    + ++GSPT+ + P  V+   +L++ 
Sbjct: 1330 LGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPTQ-SNPSMVLEICNLTLL 1388

Query: 390  TPQLASSLSWSTLCSTYNSDH 328
            TP+  + L           DH
Sbjct: 1389 TPRSGNILITDLTMELKEKDH 1409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,398
Number of Sequences: 37544
Number of extensions: 280700
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)